Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,994 | 325 | 1,652 |
| Samples | 854 | 183 | 664 |
| Peptides | 707 | 140 | 581 |
Function
ABCA9 · ATP binding cassette subfamily A member 9
This gene is a member of the superfamily of ATP-binding cassette (ABC) transporters and the encoded protein contains two transmembrane domains and two nucleotide binding folds. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White). This gene is a member of the ABC1 subfamily and is clustered with four other ABC1 family members on chromosome 17q24. Transcriptional expression of this gene is induced during monocyte differentiation into macrophages and is suppressed by cholesterol import. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 697 amino-acid changes on canonical ENST00000340001 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in ABCA9 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in ABCA9 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Oral Cavity Carcinoma | 6/54 11% | 0/0 0% |
| T-Lymphoblastic Leukemia | 4/40 10% | 0/0 0% |
| Glioblastoma | 8/98 8% | 0/0 0% |
| Chronic Myelogenous Leukemia | 2/25 8% | 0/0 0% |
| Endometrial Carcinoma | 11/42 26% | 41/612 7% |
| Melanoma | 11/210 5% | 112/1899 6% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 6/133 5% |
| Acute Myeloid Leukemia | 4/90 4% | 0/0 0% |
| Non-Small Cell Lung Carcinoma | 15/304 5% | 52/1390 4% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Squamous Cell Lung Carcinoma | 4/57 7% | 29/810 4% |
| Other Solid Cancers | 1/94 1% | 50/1515 3% |
| Neuroendocrine Tumour | 18/154 12% | 5/577 1% |
| Colorectal Carcinoma | 22/143 15% | 71/3239 2% |
| Gastric Carcinoma | 5/74 7% | 37/1809 2% |
| Ovarian Carcinoma | 9/109 8% | 12/998 1% |
| Non-Cancerous | 2/104 2% | 15/830 2% |
| Other Sarcomas | 6/69 9% | 8/699 1% |
| Bladder Carcinoma | 0/58 0% | 18/956 2% |
| Plasma Cell Myeloma | 1/44 2% | 5/305 2% |
| Esophageal Squamous Cell Carcinoma | 7/51 14% | 36/2550 1% |
| Breast Carcinoma | 17/144 12% | 39/3264 1% |
| Germ Cell Tumour | 0/25 0% | 3/169 2% |
| Cervical Carcinoma | 2/35 6% | 5/422 1% |
| Small Cell Lung Carcinoma | 4/9 44% | 7/752 1% |
| Hepatocellular Carcinoma | 2/46 4% | 25/2210 1% |
| Head and Neck Carcinoma | 3/85 4% | 16/1574 1% |
| Rhabdomyosarcoma | 1/33 3% | 1/171 1% |
| Mesothelioma | 1/62 2% | 1/165 1% |
| Esophageal Carcinoma | 0/23 0% | 6/769 1% |
Mutation Distribution
Where ABCA9 is mutated · all tissues, split by cell line vs tissue
How many mutations in ABCA9 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,994 mutations in ABCA9
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|