Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,498 | 257 | 1,225 |
| Samples | 1,313 | 224 | 1,074 |
| Peptides | 872 | 152 | 771 |
Function
BRINP3 · BMP/retinoic acid inducible neural specific 3
This gene is overexpressed in pituitary tumors but is underexpressed in tongue squamous cell carcinomas, ulcerative colitis, and peri-implantitis. Polymorphisms that increase expression of this gene have been shown to increase vascular inflammation, and an association of this gene with myocardial infarction has been demonstrated. Finally, hypermethylation of this gene may find usefulness as a biomarker for gastric cancer. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015].
Isoforms & Proteins
1 transcript · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000367462 | Q76B58 | 1,498 | 872 |
Gene Properties
Recurrent Mutations
All 874 amino-acid changes on canonical ENST00000367462 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in BRINP3 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in BRINP3 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Melanoma | 29/210 14% | 192/1899 10% |
| Squamous Cell Lung Carcinoma | 7/57 12% | 81/810 10% |
| Non-Small Cell Lung Carcinoma | 43/304 14% | 111/1390 8% |
| Small Cell Lung Carcinoma | 1/9 11% | 46/752 6% |
| Endometrial Carcinoma | 7/42 17% | 32/612 5% |
| Neuroendocrine Tumour | 32/154 21% | 10/577 2% |
| Other Solid Cancers | 9/94 10% | 79/1515 5% |
| T-Lymphoblastic Leukemia | 2/40 5% | 0/0 0% |
| Glioblastoma | 4/98 4% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| Gastric Carcinoma | 4/74 5% | 65/1809 4% |
| Colorectal Carcinoma | 12/143 8% | 100/3239 3% |
| Esophageal Carcinoma | 2/23 9% | 19/769 2% |
| Hodgkins Lymphoma | 0/16 0% | 3/122 2% |
| Hepatocellular Carcinoma | 2/46 4% | 46/2210 2% |
| Esophageal Squamous Cell Carcinoma | 7/51 14% | 47/2550 2% |
| Head and Neck Carcinoma | 3/85 4% | 31/1574 2% |
| Plasma Cell Myeloma | 2/44 5% | 5/305 2% |
| Non-Cancerous | 3/104 3% | 15/830 2% |
| Bladder Carcinoma | 2/58 3% | 17/956 2% |
| Cervical Carcinoma | 0/35 0% | 8/422 2% |
| Burkitts Lymphoma | 4/32 12% | 0/196 0% |
| Adrenocortical Carcinoma | 1/3 33% | 1/112 1% |
| Other Sarcomas | 3/69 4% | 10/699 1% |
| Ovarian Carcinoma | 6/109 6% | 12/998 1% |
| Germ Cell Tumour | 1/25 4% | 2/169 1% |
| Pheochromocytoma and Paraganglioma | 0/0 0% | 1/71 1% |
| Pancreatic Carcinoma | 6/89 7% | 16/1611 1% |
| Biliary Tract Carcinoma | 1/54 2% | 11/950 1% |
Mutation Distribution
Where BRINP3 is mutated · all tissues, split by cell line vs tissue
How many mutations in BRINP3 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 48 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,498 mutations in BRINP3
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|