Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 2,427 | 364 | 2,042 |
| Samples | 1,122 | 224 | 886 |
| Peptides | 844 | 155 | 719 |
Function
CD163L1 · CD163 molecule like 1
This gene encodes a member of the scavenger receptor cysteine-rich (SRCR) superfamily. Members of this family are secreted or membrane-anchored proteins mainly found in cells associated with the immune system. The SRCR family is defined by a 100-110 amino acid SRCR domain, which may mediate protein-protein interaction and ligand binding. The encoded protein contains twelve SRCR domains, a transmembrane region and a cytoplasmic domain. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2014].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 830 amino-acid changes on canonical ENST00000313599 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in CD163L1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in CD163L1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 7/40 18% | 0/0 0% |
| Melanoma | 29/210 14% | 233/1899 12% |
| T-Cell Non-Hodgkins Lymphoma | 2/26 8% | 0/0 0% |
| Endometrial Carcinoma | 11/42 26% | 31/612 5% |
| Squamous Cell Lung Carcinoma | 14/57 25% | 39/810 5% |
| Non-Small Cell Lung Carcinoma | 33/304 11% | 55/1390 4% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 6/133 5% |
| Small Cell Lung Carcinoma | 1/9 11% | 29/752 4% |
| Other Solid Cancers | 2/94 2% | 54/1515 4% |
| Gastric Carcinoma | 2/74 3% | 57/1809 3% |
| Colorectal Carcinoma | 24/143 17% | 71/3239 2% |
| Bladder Carcinoma | 3/58 5% | 25/956 3% |
| Other Sarcomas | 10/69 14% | 9/699 1% |
| Neuroendocrine Tumour | 12/154 8% | 5/577 1% |
| Chondrosarcoma | 2/14 14% | 0/75 0% |
| Head and Neck Carcinoma | 7/85 8% | 27/1574 2% |
| Glioblastoma | 2/98 2% | 0/0 0% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Ovarian Carcinoma | 8/109 7% | 12/998 1% |
| Cervical Carcinoma | 1/35 3% | 7/422 2% |
| Biliary Tract Carcinoma | 1/54 2% | 16/950 2% |
| Glioma | 1/52 2% | 35/2127 2% |
| Germ Cell Tumour | 0/25 0% | 3/169 2% |
| Rhabdomyosarcoma | 0/33 0% | 3/171 2% |
| Hodgkins Lymphoma | 2/16 12% | 0/122 0% |
| Hepatocellular Carcinoma | 3/46 7% | 27/2210 1% |
| Burkitts Lymphoma | 3/32 9% | 0/196 0% |
| Kidney Carcinoma | 5/85 6% | 18/1862 1% |
| Breast Carcinoma | 4/144 3% | 36/3264 1% |
| Plasma Cell Myeloma | 1/44 2% | 3/305 1% |
Mutation Distribution
Where CD163L1 is mutated · all tissues, split by cell line vs tissue
How many mutations in CD163L1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 2,427 mutations in CD163L1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|