Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 633 | 83 | 543 |
| Samples | 353 | 59 | 288 |
| Peptides | 262 | 37 | 226 |
Function
CDC73 · Cell division cycle 73
This gene encodes a tumor suppressor that is involved in transcriptional and post-transcriptional control pathways. The protein is a component of the the PAF protein complex, which associates with the RNA polymerase II subunit POLR2A and with a histone methyltransferase complex. This protein appears to facilitate the association of 3' mRNA processing factors with actively-transcribed chromatin. Mutations in this gene have been linked to hyperparathyroidism-jaw tumor syndrome, familial isolated hyperparathyroidism, and parathyroid carcinoma. [provided by RefSeq, Jul 2009].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000367435 | Q6P1J9 | 365 | 248 |
| ENST00000635846 | A0A1B0GUB2* | 267 | 188 |
| ENST00000713651 | - | 1 | 1 |
Gene Properties
Recurrent Mutations
All 248 amino-acid changes on canonical ENST00000367435 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in CDC73 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in CDC73 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Endometrial Carcinoma | 7/42 17% | 23/612 4% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| T-Lymphoblastic Leukemia | 1/40 2% | 0/0 0% |
| Glioblastoma | 2/98 2% | 0/0 0% |
| Colorectal Carcinoma | 18/143 13% | 44/3239 1% |
| Retinoblastoma | 1/27 4% | 0/30 0% |
| Germ Cell Tumour | 0/25 0% | 3/169 2% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 13/810 2% |
| Non-Small Cell Lung Carcinoma | 3/304 1% | 20/1390 1% |
| Bladder Carcinoma | 1/58 2% | 12/956 1% |
| Melanoma | 5/210 2% | 20/1899 1% |
| Chondrosarcoma | 0/14 0% | 1/75 1% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Neuroendocrine Tumour | 7/154 5% | 0/577 0% |
| Biliary Tract Carcinoma | 0/54 0% | 9/950 1% |
| Cervical Carcinoma | 1/35 3% | 3/422 1% |
| Adrenocortical Carcinoma | 0/3 0% | 1/112 1% |
| Other Solid Cancers | 0/94 0% | 13/1515 1% |
| Gastric Carcinoma | 0/74 0% | 13/1809 1% |
| Breast Carcinoma | 2/144 1% | 21/3264 1% |
| Other Sarcomas | 2/69 3% | 3/699 0% |
| Glioma | 1/52 2% | 12/2127 1% |
| Plasma Cell Myeloma | 0/44 0% | 2/305 1% |
| Esophageal Squamous Cell Carcinoma | 0/51 0% | 14/2550 1% |
| Non-Cancerous | 0/104 0% | 5/830 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 4/752 1% |
| Rhabdomyosarcoma | 0/33 0% | 1/171 1% |
| Kidney Carcinoma | 1/85 1% | 8/1862 0% |
| Ovarian Carcinoma | 0/109 0% | 5/998 0% |
| Burkitts Lymphoma | 0/32 0% | 1/196 1% |
Mutation Distribution
Where CDC73 is mutated · all tissues, split by cell line vs tissue
How many mutations in CDC73 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 633 mutations in CDC73
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|