Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 461 | 99 | 358 |
| Samples | 442 | 97 | 341 |
| Peptides | 355 | 59 | 297 |
Function
CLCA2 · Chloride channel accessory 2
This gene encodes a member of the calcium-activated chloride channel regulator (CLCR) family of proteins. Members of this family regulate the transport of chloride across the plasma membrane. The encoded protein is autoproteolytically processed to generate N- and C- terminal fragments. Expression of this gene is upregulated by the tumor suppressor protein p53 in response to DNA damage. In breast cancer, expression of this gene is downregulated and the encoded protein may inhibit migration and invasion while promoting mesenchymal-to-epithelial transition in cancer cell lines. [provided by RefSeq, Sep 2016].
Isoforms & Proteins
1 transcript · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000370565 | Q9UQC9 | 461 | 355 |
Gene Properties
Recurrent Mutations
All 355 amino-acid changes on canonical ENST00000370565 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in CLCA2 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in CLCA2 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Acute Myeloid Leukemia | 7/90 8% | 0/0 0% |
| T-Lymphoblastic Leukemia | 3/40 8% | 0/0 0% |
| Endometrial Carcinoma | 5/42 12% | 28/612 5% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Non-Small Cell Lung Carcinoma | 11/304 4% | 45/1390 3% |
| Melanoma | 5/210 2% | 60/1899 3% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Squamous Cell Lung Carcinoma | 3/57 5% | 13/810 2% |
| Adrenocortical Carcinoma | 2/3 67% | 0/112 0% |
| Other Solid Cancers | 4/94 4% | 22/1515 1% |
| Germ Cell Tumour | 3/25 12% | 0/169 0% |
| Bladder Carcinoma | 1/58 2% | 13/956 1% |
| Cervical Carcinoma | 2/35 6% | 4/422 1% |
| Gastric Carcinoma | 0/74 0% | 23/1809 1% |
| Neuroendocrine Tumour | 4/154 3% | 4/577 1% |
| Hepatocellular Carcinoma | 2/46 4% | 22/2210 1% |
| Colorectal Carcinoma | 16/143 11% | 19/3239 1% |
| Ewings Sarcoma | 2/63 3% | 1/262 0% |
| Small Cell Lung Carcinoma | 0/9 0% | 7/752 1% |
| Ovarian Carcinoma | 2/109 2% | 7/998 1% |
| Medulloblastoma | 0/0 0% | 3/450 1% |
| Non-Cancerous | 2/104 2% | 4/830 0% |
| Biliary Tract Carcinoma | 1/54 2% | 5/950 1% |
| Head and Neck Carcinoma | 2/85 2% | 8/1574 1% |
| Esophageal Carcinoma | 1/23 4% | 3/769 0% |
| Esophageal Squamous Cell Carcinoma | 1/51 2% | 11/2550 0% |
| Breast Carcinoma | 2/144 1% | 11/3264 0% |
| Glioma | 1/52 2% | 7/2127 0% |
| Thyroid Gland Carcinoma | 0/45 0% | 6/1592 0% |
| Kidney Carcinoma | 1/85 1% | 5/1862 0% |
Mutation Distribution
Where CLCA2 is mutated · all tissues, split by cell line vs tissue
How many mutations in CLCA2 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 461 mutations in CLCA2
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|