Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 21,746 | 2,733 | 18,868 |
| Samples | 3,337 | 636 | 2,673 |
| Peptides | 3,003 | 560 | 2,604 |
Function
CSMD1 · CUB and Sushi multiple domains 1
Predicted to act upstream of or within several processes, including learning or memory; mammary gland branching involved in pregnancy; and reproductive structure development. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Isoforms & Proteins
6 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 2500 amino-acid changes on canonical ENST00000635120 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in CSMD1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in CSMD1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 19/40 48% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 7/26 27% | 0/0 0% |
| Melanoma | 81/210 39% | 455/1899 24% |
| Chronic Myelogenous Leukemia | 5/25 20% | 0/0 0% |
| Non-Small Cell Lung Carcinoma | 100/304 33% | 197/1390 14% |
| Endometrial Carcinoma | 16/42 38% | 84/612 14% |
| Gastric Carcinoma | 19/74 26% | 252/1809 14% |
| Squamous Cell Lung Carcinoma | 19/57 33% | 96/810 12% |
| Other Solid Cancers | 11/94 12% | 195/1515 13% |
| Oral Cavity Carcinoma | 6/54 11% | 0/0 0% |
| Acute Myeloid Leukemia | 9/90 10% | 0/0 0% |
| Colorectal Carcinoma | 49/143 34% | 288/3239 9% |
| Neuroendocrine Tumour | 48/154 31% | 19/577 3% |
| Esophageal Carcinoma | 6/23 26% | 59/769 8% |
| Small Cell Lung Carcinoma | 4/9 44% | 56/752 7% |
| Glioblastoma | 7/98 7% | 0/0 0% |
| Esophageal Squamous Cell Carcinoma | 10/51 20% | 162/2550 6% |
| Mesothelioma | 10/62 16% | 5/165 3% |
| Hodgkins Lymphoma | 4/16 25% | 5/122 4% |
| Cervical Carcinoma | 2/35 6% | 27/422 6% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 8/133 6% |
| Hepatocellular Carcinoma | 7/46 15% | 114/2210 5% |
| Unknown | 0/10 0% | 2/29 7% |
| Chordoma | 0/7 0% | 1/13 8% |
| Ovarian Carcinoma | 28/109 26% | 27/998 3% |
| Bladder Carcinoma | 6/58 10% | 43/956 4% |
| Pancreatic Carcinoma | 10/89 11% | 69/1611 4% |
| Head and Neck Carcinoma | 12/85 14% | 63/1574 4% |
| Non-Cancerous | 3/104 3% | 39/830 5% |
| Other Sarcomas | 10/69 14% | 24/699 3% |
Mutation Distribution
Where CSMD1 is mutated · all tissues, split by cell line vs tissue
How many mutations in CSMD1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 53 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 21,746 mutations in CSMD1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|