Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 17,008 | 2,115 | 14,725 |
| Samples | 4,246 | 695 | 3,501 |
| Peptides | 4,009 | 635 | 3,543 |
Function
CSMD3 · CUB and Sushi multiple domains 3
Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 2500 amino-acid changes on canonical ENST00000297405 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in CSMD3 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in CSMD3 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 18/40 45% | 0/0 0% |
| Squamous Cell Lung Carcinoma | 39/57 68% | 264/810 33% |
| Non-Small Cell Lung Carcinoma | 131/304 43% | 355/1390 26% |
| Melanoma | 65/210 31% | 388/1899 20% |
| Chronic Myelogenous Leukemia | 5/25 20% | 0/0 0% |
| Endometrial Carcinoma | 19/42 45% | 105/612 17% |
| Small Cell Lung Carcinoma | 7/9 78% | 122/752 16% |
| Gastric Carcinoma | 19/74 26% | 253/1809 14% |
| Neuroendocrine Tumour | 59/154 38% | 45/577 8% |
| Acute Myeloid Leukemia | 12/90 13% | 0/0 0% |
| Other Solid Cancers | 11/94 12% | 203/1515 13% |
| Hodgkins Lymphoma | 7/16 44% | 9/122 7% |
| Oral Cavity Carcinoma | 6/54 11% | 0/0 0% |
| Esophageal Carcinoma | 5/23 22% | 80/769 10% |
| Esophageal Squamous Cell Carcinoma | 15/51 29% | 260/2550 10% |
| Colorectal Carcinoma | 41/143 29% | 315/3239 10% |
| Head and Neck Carcinoma | 17/85 20% | 152/1574 10% |
| Bladder Carcinoma | 7/58 12% | 89/956 9% |
| Glioblastoma | 8/98 8% | 0/0 0% |
| Ovarian Carcinoma | 19/109 17% | 69/998 7% |
| T-Cell Non-Hodgkins Lymphoma | 2/26 8% | 0/0 0% |
| Other Sarcomas | 15/69 22% | 39/699 6% |
| Cervical Carcinoma | 4/35 11% | 26/422 6% |
| Hepatocellular Carcinoma | 4/46 9% | 139/2210 6% |
| Plasma Cell Myeloma | 9/44 20% | 13/305 4% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 7/133 5% |
| Osteosarcoma | 7/45 16% | 4/166 2% |
| Chordoma | 1/7 14% | 0/13 0% |
| Biliary Tract Carcinoma | 8/54 15% | 40/950 4% |
| Chondrosarcoma | 4/14 29% | 0/75 0% |
Mutation Distribution
Where CSMD3 is mutated · all tissues, split by cell line vs tissue
How many mutations in CSMD3 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 44 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 17,008 mutations in CSMD3
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|