Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,222 | 144 | 1,053 |
| Samples | 222 | 44 | 173 |
| Peptides | 192 | 29 | 166 |
Function
CTSD · Cathepsin D
This gene encodes a member of the A1 family of peptidases. The encoded preproprotein is proteolytically processed to generate multiple protein products. These products include the cathepsin D light and heavy chains, which heterodimerize to form the mature enzyme. This enzyme exhibits pepsin-like activity and plays a role in protein turnover and in the proteolytic activation of hormones and growth factors. Mutations in this gene play a causal role in neuronal ceroid lipofuscinosis-10 and may be involved in the pathogenesis of several other diseases, including breast cancer and possibly Alzheimer's disease. [provided by RefSeq, Nov 2015].
Isoforms & Proteins
6 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000236671 | P07339 | 226 | 149 |
| ENST00000636843 | A0A1B0GWE8* | 201 | 140 |
| ENST00000637815 | A0A1B0GV23* | 200 | 139 |
| ENST00000636571 | A0A1B0GW44* | 199 | 139 |
| ENST00000637387 | A0A1B0GVP3* | 199 | 138 |
| ENST00000637915 | A0A1B0GVD5* | 197 | 137 |
Gene Properties
Recurrent Mutations
All 149 amino-acid changes on canonical ENST00000236671 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in CTSD · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in CTSD – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Endometrial Carcinoma | 4/42 10% | 13/612 2% |
| T-Lymphoblastic Leukemia | 1/40 2% | 0/0 0% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 2/133 2% |
| Colorectal Carcinoma | 11/143 8% | 28/3239 1% |
| Gastric Carcinoma | 4/74 5% | 15/1809 1% |
| Bladder Carcinoma | 0/58 0% | 10/956 1% |
| Rhabdomyosarcoma | 0/33 0% | 2/171 1% |
| Mesothelioma | 1/62 2% | 1/165 1% |
| Squamous Cell Lung Carcinoma | 4/57 7% | 3/810 0% |
| Melanoma | 4/210 2% | 13/1899 1% |
| Other Solid Cancers | 2/94 2% | 9/1515 1% |
| Non-Small Cell Lung Carcinoma | 2/304 1% | 9/1390 1% |
| Biliary Tract Carcinoma | 0/54 0% | 6/950 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 4/752 1% |
| Prostate Carcinoma | 0/13 0% | 10/2105 0% |
| Medulloblastoma | 0/0 0% | 2/450 0% |
| Thyroid Gland Carcinoma | 0/45 0% | 6/1592 0% |
| Glioma | 0/52 0% | 8/2127 0% |
| Head and Neck Carcinoma | 1/85 1% | 5/1574 0% |
| Hepatocellular Carcinoma | 0/46 0% | 8/2210 0% |
| Plasma Cell Myeloma | 0/44 0% | 1/305 0% |
| Neuroendocrine Tumour | 1/154 1% | 1/577 0% |
| Cervical Carcinoma | 0/35 0% | 1/422 0% |
| Kidney Carcinoma | 0/85 0% | 4/1862 0% |
| Breast Carcinoma | 1/144 1% | 6/3264 0% |
| Ovarian Carcinoma | 1/109 1% | 1/998 0% |
| Pancreatic Carcinoma | 1/89 1% | 2/1611 0% |
| B-Cell Non-Hodgkins Lymphoma | 2/88 2% | 2/2534 0% |
| Esophageal Carcinoma | 0/23 0% | 1/769 0% |
Mutation Distribution
Where CTSD is mutated · all tissues, split by cell line vs tissue
How many mutations in CTSD were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,222 mutations in CTSD
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|