Stats by Source
Global, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Global = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Global can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Global | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 10,291 | 677 | 9,380 |
| Samples | 637 | 110 | 515 |
| Peptides | 580 | 88 | 524 |
Function
DDX3X · DEAD-box helicase 3 X-linked
The protein encoded by this gene is a member of the large DEAD-box protein family, that is defined by the presence of the conserved Asp-Glu-Ala-Asp (DEAD) motif, and has ATP-dependent RNA helicase activity. This protein has been reported to display a high level of RNA-independent ATPase activity, and unlike most DEAD-box helicases, the ATPase activity is thought to be stimulated by both RNA and DNA. This protein has multiple conserved domains and is thought to play roles in both the nucleus and cytoplasm. Nuclear roles include transcriptional regulation, mRNP assembly, pre-mRNA splicing, and mRNA export. In the cytoplasm, this protein is thought to be involved in translation, cellular signaling, and viral replication. Misregulation of this gene has been implicated in tumorigenesis. This gene has a paralog located in the nonrecombining region of the Y chromosome. Pseudogenes sharing similarity to both this gene and the DDX3Y paralog are found on chromosome 4 and the X chromosome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014].
Isoforms & Proteins
21 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000644876 | O00571 | 679 | 411 |
| ENST00000457138 | O00571-2 | 618 | 390 |
| ENST00000644109 | A0A2R8Y645* | 598 | 391 |
| ENST00000399959 | A0A2U3TZJ9* | 584 | 381 |
| ENST00000629496 | O00571 | 584 | 381 |
| ENST00000644073 | A0A2R8YCW1* | 584 | 381 |
| ENST00000644074 | A0A2R8YFR4* | 584 | 381 |
| ENST00000644513 | A0A2R8Y4A4* | 584 | 381 |
| ENST00000646319 | A0A2R8YFS5* | 584 | 381 |
| ENST00000625837 | A0A0D9SF53* | 573 | 372 |
| ENST00000626301 | A0A0D9SFB3* | 572 | 371 |
| ENST00000646122 | A0A2R8YF78* | 571 | 370 |
| ENST00000644677 | A0A2R8Y5G6* | 558 | 362 |
| ENST00000646107 | A0A2R8Y5G6* | 558 | 362 |
| ENST00000441189 | F6S8Q4* | 543 | 360 |
| ENST00000642424 | A0A2R8Y7T2* | 494 | 313 |
| ENST00000646627 | A0A2R8Y7T2* | 494 | 313 |
| ENST00000646679 | A0A2R8YDT5* | 494 | 313 |
| ENST00000642322 | - | 23 | 20 |
| ENST00000643821 | A0A2R8YF31* | 10 | 9 |
| ENST00000629785 | O00571 | 2 | 2 |
Gene Properties
Recurrent Mutations
Top recurrent amino-acid changes along the protein · needle height = number of mutations
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation Distribution
Where DDX3X is mutated · all tissues, split by cell line vs tissue
How many mutations in DDX3X were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 10,291 mutations in DDX3X
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Peptide |
|---|