Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 2,746 | 212 | 2,516 |
| Samples | 749 | 107 | 633 |
| Peptides | 488 | 70 | 431 |
Function
DNMT3A · DNA methyltransferase 3 alpha
CpG methylation is an epigenetic modification that is important for embryonic development, imprinting, and X-chromosome inactivation. Studies in mice have demonstrated that DNA methylation is required for mammalian development. This gene encodes a DNA methyltransferase that is thought to function in de novo methylation, rather than maintenance methylation. The protein localizes to the cytoplasm and nucleus and its expression is developmentally regulated. [provided by RefSeq, Mar 2016].
Isoforms & Proteins
5 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000321117 | Q9Y6K1 | 776 | 465 |
| ENST00000264709 | Q9Y6K1 | 707 | 447 |
| ENST00000380746 | Q9Y6K1-2 | 601 | 364 |
| ENST00000402667 | A0A0C4DG02* | 587 | 353 |
| ENST00000406659 | Q9Y6K1-3 | 75 | 63 |
Gene Properties
Recurrent Mutations
All 465 amino-acid changes on canonical ENST00000321117 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in DNMT3A · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in DNMT3A – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 6/40 15% | 0/0 0% |
| Chronic Myelogenous Leukemia | 3/25 12% | 0/0 0% |
| Other Blood Cancers | 3/61 5% | 140/2725 5% |
| Endometrial Carcinoma | 4/42 10% | 27/612 4% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Acute Myeloid Leukemia | 3/90 3% | 0/0 0% |
| Colorectal Carcinoma | 20/143 14% | 73/3239 2% |
| Germ Cell Tumour | 2/25 8% | 3/169 2% |
| Melanoma | 8/210 4% | 44/1899 2% |
| Non-Small Cell Lung Carcinoma | 15/304 5% | 26/1390 2% |
| Hodgkins Lymphoma | 2/16 12% | 1/122 1% |
| Squamous Cell Lung Carcinoma | 2/57 4% | 16/810 2% |
| Other Solid Cancers | 3/94 3% | 30/1515 2% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Small Cell Lung Carcinoma | 0/9 0% | 13/752 2% |
| Bladder Carcinoma | 1/58 2% | 15/956 2% |
| Rhabdomyosarcoma | 1/33 3% | 2/171 1% |
| Glioma | 4/52 8% | 28/2127 1% |
| Head and Neck Carcinoma | 5/85 6% | 19/1574 1% |
| Biliary Tract Carcinoma | 1/54 2% | 13/950 1% |
| Cervical Carcinoma | 1/35 3% | 5/422 1% |
| Other Sarcomas | 1/69 1% | 9/699 1% |
| Gastric Carcinoma | 0/74 0% | 24/1809 1% |
| Neuroendocrine Tumour | 2/154 1% | 7/577 1% |
| Hepatocellular Carcinoma | 3/46 7% | 24/2210 1% |
| Non-Cancerous | 2/104 2% | 9/830 1% |
| Glioblastoma | 1/98 1% | 0/0 0% |
| Osteosarcoma | 0/45 0% | 2/166 1% |
| Meningioma | 0/3 0% | 2/252 1% |
| Kidney Carcinoma | 0/85 0% | 15/1862 1% |
Mutation Distribution
Where DNMT3A is mutated · all tissues, split by cell line vs tissue
How many mutations in DNMT3A were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 2,746 mutations in DNMT3A
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|