Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 368 | 60 | 285 |
| Samples | 225 | 53 | 160 |
| Peptides | 235 | 48 | 178 |
Function
FPGT · Fucose-1-phosphate guanylyltransferase
L-fucose is a key sugar in glycoproteins and other complex carbohydrates since it may be involved in many of the functional roles of these macromolecules, such as in cell-cell recognition. The fucosyl donor for these fucosylated oligosaccharides is GDP-beta-L-fucose. There are two alternate pathways for the biosynthesis of GDP-fucose; the major pathway converts GDP-alpha-D-mannose to GDP-beta-L-fucose. The protein encoded by this gene participates in an alternate pathway that is present in certain mammalian tissues, such as liver and kidney, and appears to function as a salvage pathway to reutilize L-fucose arising from the turnover of glycoproteins and glycolipids. This pathway involves the phosphorylation of L-fucose to form beta-L-fucose-1-phosphate, and then condensation of the beta-L-fucose-1-phosphate with GTP by fucose-1-phosphate guanylyltransferase to form GDP-beta-L-fucose. Alternative splicing results in multiple transcript variants. Read-through transcription also exists between this gene and the neighboring downstream TNNI3 interacting kinase (TNNI3K) gene. [provided by RefSeq, Dec 2010].
Isoforms & Proteins
5 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000534056 | O14772-2 | 167 | 134 |
| ENST00000370894 | O14772-3 | 75 | 64 |
| ENST00000370898 | A0A0S2Z5C6* | 66 | 61 |
| ENST00000482102 | E9PMM4* | 58 | 48 |
| ENST00000467578 | E9PMK0* | 2 | 2 |
Gene Properties
Recurrent Mutations
All 134 amino-acid changes on canonical ENST00000534056 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in FPGT · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in FPGT – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Chronic Myelogenous Leukemia | 1/25 4% | 0/0 0% |
| Acute Myeloid Leukemia | 3/90 3% | 0/0 0% |
| Endometrial Carcinoma | 3/42 7% | 8/612 1% |
| Squamous Cell Lung Carcinoma | 2/57 4% | 8/810 1% |
| Non-Small Cell Lung Carcinoma | 6/304 2% | 13/1390 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 7/752 1% |
| Colorectal Carcinoma | 7/143 5% | 23/3239 1% |
| Melanoma | 4/210 2% | 14/1899 1% |
| Gastric Carcinoma | 2/74 3% | 14/1809 1% |
| Neuroendocrine Tumour | 5/154 3% | 1/577 0% |
| Bladder Carcinoma | 0/58 0% | 8/956 1% |
| Hepatocellular Carcinoma | 2/46 4% | 12/2210 1% |
| Head and Neck Carcinoma | 3/85 4% | 7/1574 0% |
| Other Solid Cancers | 0/94 0% | 9/1515 1% |
| Other Sarcomas | 1/69 1% | 3/699 0% |
| Biliary Tract Carcinoma | 0/54 0% | 5/950 1% |
| Osteosarcoma | 0/45 0% | 1/166 1% |
| Ovarian Carcinoma | 3/109 3% | 2/998 0% |
| Burkitts Lymphoma | 0/32 0% | 1/196 1% |
| Mesothelioma | 1/62 2% | 0/165 0% |
| Esophageal Squamous Cell Carcinoma | 1/51 2% | 9/2550 0% |
| Glioma | 2/52 4% | 5/2127 0% |
| Ewings Sarcoma | 1/63 2% | 0/262 0% |
| Kidney Carcinoma | 0/85 0% | 6/1862 0% |
| Breast Carcinoma | 1/144 1% | 8/3264 0% |
| Prostate Carcinoma | 1/13 8% | 4/2105 0% |
| Cervical Carcinoma | 0/35 0% | 1/422 0% |
| Other Blood Cancers | 3/61 5% | 0/2725 0% |
| B-Cell Non-Hodgkins Lymphoma | 0/88 0% | 2/2534 0% |
| Neuroblastoma | 1/87 1% | 0/1331 0% |
Mutation Distribution
Where FPGT is mutated · all tissues, split by cell line vs tissue
How many mutations in FPGT were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 368 mutations in FPGT
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|