Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,109 | 144 | 953 |
| Samples | 381 | 73 | 302 |
| Peptides | 321 | 57 | 271 |
Function
HDAC5 · Histone deacetylase 5
Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene belongs to the class II histone deacetylase/acuc/apha family. It possesses histone deacetylase activity and represses transcription when tethered to a promoter. It coimmunoprecipitates only with HDAC3 family member and might form multicomplex proteins. It also interacts with myocyte enhancer factor-2 (MEF2) proteins, resulting in repression of MEF2-dependent genes. This gene is thought to be associated with colon cancer. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
4 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 283 amino-acid changes on canonical ENST00000225983 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in HDAC5 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in HDAC5 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 2/40 5% | 0/0 0% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 6/133 5% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| Endometrial Carcinoma | 2/42 5% | 18/612 3% |
| Cervical Carcinoma | 2/35 6% | 7/422 2% |
| Gastric Carcinoma | 2/74 3% | 32/1809 2% |
| Burkitts Lymphoma | 2/32 6% | 2/196 1% |
| Colorectal Carcinoma | 19/143 13% | 40/3239 1% |
| Bladder Carcinoma | 7/58 12% | 9/956 1% |
| Melanoma | 1/210 0% | 32/1899 2% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Osteosarcoma | 2/45 4% | 0/166 0% |
| Thyroid Gland Carcinoma | 0/45 0% | 14/1592 1% |
| Esophageal Squamous Cell Carcinoma | 1/51 2% | 20/2550 1% |
| Non-Small Cell Lung Carcinoma | 3/304 1% | 10/1390 1% |
| Biliary Tract Carcinoma | 1/54 2% | 6/950 1% |
| Glioma | 1/52 2% | 14/2127 1% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 6/810 1% |
| Other Solid Cancers | 0/94 0% | 11/1515 1% |
| Prostate Carcinoma | 1/13 8% | 13/2105 1% |
| Ovarian Carcinoma | 4/109 4% | 2/998 0% |
| Breast Carcinoma | 5/144 3% | 13/3264 0% |
| Other Sarcomas | 2/69 3% | 2/699 0% |
| Esophageal Carcinoma | 0/23 0% | 4/769 1% |
| Head and Neck Carcinoma | 0/85 0% | 8/1574 1% |
| Hepatocellular Carcinoma | 0/46 0% | 10/2210 0% |
| Medulloblastoma | 0/0 0% | 2/450 0% |
| Non-Cancerous | 2/104 2% | 2/830 0% |
| Kidney Carcinoma | 1/85 1% | 6/1862 0% |
| B-Cell Non-Hodgkins Lymphoma | 2/88 2% | 6/2534 0% |
Mutation Distribution
Where HDAC5 is mutated · all tissues, split by cell line vs tissue
How many mutations in HDAC5 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,109 mutations in HDAC5
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|