Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,216 | 214 | 971 |
| Samples | 757 | 151 | 586 |
| Peptides | 559 | 114 | 460 |
Function
IFT140 · Intraflagellar transport 140
This gene encodes one of the subunits of the intraflagellar transport (IFT) complex A. Intraflagellar transport is involved in the genesis, resorption and signaling of primary cilia. The primary cilium is a microtubule-based sensory organelle at the surface of most quiescent mammalian cells, that receives signals from its environment, such as the flow of fluid, light or odors, and transduces those signals to the nucleus. Loss of the corresponding protein in mouse results in renal cystic disease. [provided by RefSeq, Jun 2012].
Isoforms & Proteins
2 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 551 amino-acid changes on canonical ENST00000426508 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in IFT140 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in IFT140 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 7/40 18% | 0/0 0% |
| Endometrial Carcinoma | 8/42 19% | 36/612 6% |
| Hodgkins Lymphoma | 6/16 38% | 1/122 1% |
| Chronic Myelogenous Leukemia | 1/25 4% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Melanoma | 10/210 5% | 59/1899 3% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 4/133 3% |
| Colorectal Carcinoma | 25/143 17% | 75/3239 2% |
| Esophageal Squamous Cell Carcinoma | 4/51 8% | 65/2550 3% |
| Non-Small Cell Lung Carcinoma | 14/304 5% | 29/1390 2% |
| Gastric Carcinoma | 3/74 4% | 44/1809 2% |
| Other Solid Cancers | 6/94 6% | 34/1515 2% |
| Squamous Cell Lung Carcinoma | 2/57 4% | 15/810 2% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Small Cell Lung Carcinoma | 0/9 0% | 14/752 2% |
| Thyroid Gland Carcinoma | 0/45 0% | 29/1592 2% |
| Bladder Carcinoma | 3/58 5% | 14/956 1% |
| Germ Cell Tumour | 2/25 8% | 1/169 1% |
| Cervical Carcinoma | 0/35 0% | 7/422 2% |
| Rhabdomyosarcoma | 1/33 3% | 2/171 1% |
| Other Sarcomas | 4/69 6% | 7/699 1% |
| Pheochromocytoma and Paraganglioma | 0/0 0% | 1/71 1% |
| Non-Cancerous | 1/104 1% | 12/830 1% |
| Burkitts Lymphoma | 3/32 9% | 0/196 0% |
| Esophageal Carcinoma | 2/23 9% | 8/769 1% |
| Neuroendocrine Tumour | 7/154 5% | 2/577 0% |
| Plasma Cell Myeloma | 2/44 5% | 2/305 1% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Kidney Carcinoma | 5/85 6% | 15/1862 1% |
| Hepatocellular Carcinoma | 1/46 2% | 22/2210 1% |
Mutation Distribution
Where IFT140 is mutated · all tissues, split by cell line vs tissue
How many mutations in IFT140 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,216 mutations in IFT140
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|