LAMC2

Laminin subunit gamma 2 Q13753 LAMC2_HUMAN
Protein Coding Chr 1 1q25.3 Swiss-Prot reviewed Entrez 3918
Mutations
1,193
CL 214 · Tissue 975
Samples
594
CL 135 · Tissue 456
Peptides
469
unique mutant peptides
Transcripts
2
isoforms mutated

Stats by Source

Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)

How the counts split by source
Stats by Source

Total = all mutations for this gene across every source.

Cell line = COSMIC Cell Lines Project + DepMap + PubMed.

Tissue = COSMIC primary-tissue (patient tumour) samples.

Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.

TotalCell lineTissue
Mutations1,193214975
Samples594135456
Peptides46987399

Function

LAMC2 · Laminin subunit gamma 2

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins, composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively), have a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the gamma chain isoform laminin, gamma 2. The gamma 2 chain, formerly thought to be a truncated version of beta chain (B2t), is highly homologous to the gamma 1 chain; however, it lacks domain VI, and domains V, IV and III are shorter. It is expressed in several fetal tissues but differently from gamma 1, and is specifically localized to epithelial cells in skin, lung and kidney. The gamma 2 chain together with alpha 3 and beta 3 chains constitute laminin 5 (earlier known as kalinin), which is an integral part of the anchoring filaments that connect epithelial cells to the underlying basement membrane. The epithelium-specific expression of the gamma 2 chain implied its role as an epithelium attachment molecule, and mutations in this gene have been associated with junctional epidermolysis bullosa, a skin disease characterized by blisters due to disruption of the epidermal-dermal junction. Two transcript variants resulting from alternative splicing of the 3' terminal exon, and encoding different isoforms of gamma 2 chain, have been described. The two variants are differentially expressed in embryonic tissues, however, the biological significance of the two forms is not known. Transcript variants utilizing alternative polyA_signal have also been noted in literature. [provided by RefSeq, Aug 2011].

Isoforms & Proteins

2 transcripts · UniProt mapping is sequence-verified (AA-safe)

About the isoform mapping
Isoforms & Proteins

Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.

The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.

Counts are mutations and unique mutant peptides on each transcript.

TranscriptUniProtMutationsPeptides
ENST00000264144 Q13753 649 461
ENST00000493293 Q13753-2 544 416

Gene Properties

Type
Protein Coding
Chromosome
1
Cytoband
1q25.3
Entrez ID
Aliases
B2TBM600CSFEBR2EBR2AJEB3A

Recurrent Mutations

All 461 amino-acid changes on canonical ENST00000264144 · needle height = samples · drag the mini-map to zoom

What this lollipop shows
Recurrent Mutations

A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).

X-axis = amino-acid position in the protein.

Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.

The most recurrent changes are labelled; hover any needle for the change, position and counts.

Mutation frequency across cancer types

% of samples with a missense/complex mutation in LAMC2 · cell line vs tissue

How this frequency is counted
Cancer-type mutation frequency

For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in LAMC2 – counted as distinct samples (a sample counts once no matter how many mutations it has).

Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.

Cancer typeCell linesTissue samples
T-Lymphoblastic Leukemia
7/40 18%
0/0 0%
Chordoma
2/7 29%
0/13 0%
Chronic Myelogenous Leukemia
2/25 8%
0/0 0%
Endometrial Carcinoma
3/42 7%
28/612 5%
Melanoma
15/210 7%
75/1899 4%
Gastrointestinal Stromal Tumour
0/0 0%
4/133 3%
Chondrosarcoma
1/14 7%
1/75 1%
Squamous Cell Lung Carcinoma
7/57 12%
12/810 1%
Plasma Cell Myeloma
4/44 9%
3/305 1%
Colorectal Carcinoma
20/143 14%
48/3239 1%
Gastric Carcinoma
2/74 3%
31/1809 2%
Non-Small Cell Lung Carcinoma
7/304 2%
22/1390 2%
Hepatocellular Carcinoma
9/46 20%
28/2210 1%
Other Solid Cancers
2/94 2%
22/1515 1%
Hodgkins Lymphoma
0/16 0%
2/122 2%
Mesothelioma
3/62 5%
0/165 0%
Cervical Carcinoma
1/35 3%
5/422 1%
Head and Neck Carcinoma
3/85 4%
18/1574 1%
Neuroendocrine Tumour
8/154 5%
1/577 0%
Bladder Carcinoma
1/58 2%
11/956 1%
Esophageal Carcinoma
0/23 0%
9/769 1%
Acute Myeloid Leukemia
1/90 1%
0/0 0%
Small Cell Lung Carcinoma
0/9 0%
8/752 1%
Glioblastoma
1/98 1%
0/0 0%
Glioma
2/52 4%
20/2127 1%
Esophageal Squamous Cell Carcinoma
0/51 0%
24/2550 1%
Ovarian Carcinoma
5/109 5%
5/998 0%
Non-Cancerous
1/104 1%
7/830 1%
Kidney Carcinoma
4/85 5%
12/1862 1%
Biliary Tract Carcinoma
1/54 2%
6/950 1%

Mutation Distribution

Where LAMC2 is mutated · all tissues, split by cell line vs tissue

Mutation counts by tissue
Mutation Distribution

How many mutations in LAMC2 were found in each tissue, across the whole database.

Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.

This shows the cancer-context where this gene is recurrently altered.

GTEx Expression

Median TPM across 54 healthy tissues

GTEx Portal ↗
About the expression data
GTEx Expression

Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.

Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.

Scroll or drag the mini-axis below the chart to browse all tissues.

Mutations

All 1,193 mutations in LAMC2

About the mutation list
Mutations

Every mutation record for this gene, across all samples and sources.

The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).

Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.

IDSampleTranscriptAA Change CDSTypeSourceMutant PeptideWild-type Peptide