Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,496 | 327 | 1,148 |
| Samples | 582 | 251 | 323 |
| Peptides | 270 | 59 | 209 |
Function
LILRB3 · Leukocyte immunoglobulin like receptor B3
This gene is a member of the leukocyte immunoglobulin-like receptor (LIR) family, which is found in a gene cluster at chromosomal region 19q13.4. The encoded protein belongs to the subfamily B class of LIR receptors which contain two or four extracellular immunoglobulin domains, a transmembrane domain, and two to four cytoplasmic immunoreceptor tyrosine-based inhibitory motifs (ITIMs). The receptor is expressed on immune cells where it binds to MHC class I molecules on antigen-presenting cells and transduces a negative signal that inhibits stimulation of an immune response. It is thought to control inflammatory responses and cytotoxicity to help focus the immune response and limit autoreactivity. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
5 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000346401 | F8W6G6* | 429 | 225 |
| ENST00000245620 | - | 415 | 212 |
| ENST00000391750 | C9JWL8* | 414 | 211 |
| ENST00000445347 | C9JWL8* | 237 | 30 |
| ENST00000613833 | A0A0G2JLT7* | 1 | 1 |
Gene Properties
Recurrent Mutations
All 225 amino-acid changes on canonical ENST00000346401 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in LILRB3 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in LILRB3 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Chronic Myelogenous Leukemia | 4/25 16% | 0/0 0% |
| T-Lymphoblastic Leukemia | 6/40 15% | 0/0 0% |
| Glioblastoma | 11/98 11% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 2/26 8% | 0/0 0% |
| Oral Cavity Carcinoma | 3/54 6% | 0/0 0% |
| Osteosarcoma | 8/45 18% | 0/166 0% |
| Endometrial Carcinoma | 1/42 2% | 17/612 3% |
| Melanoma | 21/210 10% | 33/1899 2% |
| Unknown | 1/10 10% | 0/29 0% |
| Rhabdomyosarcoma | 2/33 6% | 3/171 2% |
| Other Solid Cancers | 11/94 12% | 28/1515 2% |
| Acute Myeloid Leukemia | 2/90 2% | 0/0 0% |
| Mesothelioma | 5/62 8% | 0/165 0% |
| Burkitts Lymphoma | 3/32 9% | 2/196 1% |
| Non-Small Cell Lung Carcinoma | 21/304 7% | 16/1390 1% |
| Thyroid Gland Carcinoma | 3/45 7% | 28/1592 2% |
| Biliary Tract Carcinoma | 7/54 13% | 10/950 1% |
| Bladder Carcinoma | 4/58 7% | 12/956 1% |
| Ewings Sarcoma | 5/63 8% | 0/262 0% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 2/133 2% |
| Hodgkins Lymphoma | 2/16 12% | 0/122 0% |
| Plasma Cell Myeloma | 5/44 11% | 0/305 0% |
| Neuroendocrine Tumour | 6/154 4% | 4/577 1% |
| Cervical Carcinoma | 2/35 6% | 4/422 1% |
| Squamous Cell Lung Carcinoma | 4/57 7% | 7/810 1% |
| Colorectal Carcinoma | 14/143 10% | 28/3239 1% |
| B-Cell Non-Hodgkins Lymphoma | 7/88 8% | 25/2534 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 9/752 1% |
| Gastric Carcinoma | 12/74 16% | 10/1809 1% |
| Other Sarcomas | 5/69 7% | 4/699 1% |
Mutation Distribution
Where LILRB3 is mutated · all tissues, split by cell line vs tissue
How many mutations in LILRB3 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,496 mutations in LILRB3
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|