Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 998 | 162 | 820 |
| Samples | 239 | 57 | 177 |
| Peptides | 197 | 40 | 159 |
Function
MS4A1 · Membrane spanning 4-domains A1
This gene encodes a member of the membrane-spanning 4A gene family. Members of this nascent protein family are characterized by common structural features and similar intron/exon splice boundaries and display unique expression patterns among hematopoietic cells and nonlymphoid tissues. This gene encodes a B-lymphocyte surface molecule which plays a role in the development and differentiation of B-cells into plasma cells. This family member is localized to 11q12, among a cluster of family members. Alternative splicing of this gene results in two transcript variants which encode the same protein. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
5 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 170 amino-acid changes on canonical ENST00000345732 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in MS4A1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in MS4A1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Chondrosarcoma | 1/14 7% | 1/75 1% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Other Solid Cancers | 3/94 3% | 26/1515 2% |
| Non-Small Cell Lung Carcinoma | 13/304 4% | 15/1390 1% |
| Melanoma | 6/210 3% | 28/1899 1% |
| Endometrial Carcinoma | 3/42 7% | 7/612 1% |
| Squamous Cell Lung Carcinoma | 1/57 2% | 11/810 1% |
| Small Cell Lung Carcinoma | 2/9 22% | 7/752 1% |
| Mesothelioma | 2/62 3% | 0/165 0% |
| Colorectal Carcinoma | 5/143 4% | 17/3239 1% |
| Ovarian Carcinoma | 3/109 3% | 3/998 0% |
| Bladder Carcinoma | 0/58 0% | 5/956 1% |
| Burkitts Lymphoma | 0/32 0% | 1/196 1% |
| Cervical Carcinoma | 2/35 6% | 0/422 0% |
| Esophageal Squamous Cell Carcinoma | 0/51 0% | 11/2550 0% |
| Head and Neck Carcinoma | 1/85 1% | 6/1574 0% |
| Glioma | 0/52 0% | 9/2127 0% |
| Meningioma | 1/3 33% | 0/252 0% |
| Other Sarcomas | 0/69 0% | 3/699 0% |
| Breast Carcinoma | 8/144 6% | 2/3264 0% |
| Neuroblastoma | 0/87 0% | 4/1331 0% |
| Gastric Carcinoma | 0/74 0% | 5/1809 0% |
| Non-Cancerous | 0/104 0% | 2/830 0% |
| Biliary Tract Carcinoma | 0/54 0% | 2/950 0% |
| B-Cell Non-Hodgkins Lymphoma | 2/88 2% | 3/2534 0% |
| Hepatocellular Carcinoma | 0/46 0% | 4/2210 0% |
| Neuroendocrine Tumour | 1/154 1% | 0/577 0% |
| Esophageal Carcinoma | 0/23 0% | 1/769 0% |
| Pancreatic Carcinoma | 1/89 1% | 1/1611 0% |
| Thyroid Gland Carcinoma | 0/45 0% | 2/1592 0% |
Mutation Distribution
Where MS4A1 is mutated · all tissues, split by cell line vs tissue
How many mutations in MS4A1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 998 mutations in MS4A1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|