Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 515 | 95 | 409 |
| Samples | 484 | 85 | 389 |
| Peptides | 345 | 64 | 288 |
Function
NOD1 · Nucleotide binding oligomerization domain containing 1
This gene encodes a member of the nucleotide-binding oligomerization domain (NOD)-like receptor (NLR) family of proteins. The encoded protein plays a role in innate immunity by acting as a pattern-recognition receptor (PRR) that binds bacterial peptidoglycans and initiates inflammation. This protein has also been implicated in the immune response to viral and parasitic infection. Major structural features of this protein include an N-terminal caspase recruitment domain (CARD), a centrally located nucleotide-binding domain (NBD), and 10 tandem leucine-rich repeats (LRRs) in its C terminus. The CARD is involved in apoptotic signaling, LRRs participate in protein-protein interactions, and mutations in the NBD may affect the process of oligomerization and subsequent function of the LRR domain. Mutations in this gene are associated with asthma, inflammatory bowel disease, Behcet disease and sarcoidosis in human patients. [provided by RefSeq, Aug 2017].
Isoforms & Proteins
1 transcript · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000222823 | Q9Y239 | 515 | 345 |
Gene Properties
Recurrent Mutations
All 345 amino-acid changes on canonical ENST00000222823 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in NOD1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in NOD1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 8/40 20% | 0/0 0% |
| Chronic Myelogenous Leukemia | 2/25 8% | 0/0 0% |
| Endometrial Carcinoma | 1/42 2% | 24/612 4% |
| Hodgkins Lymphoma | 2/16 12% | 3/122 2% |
| Other Solid Cancers | 2/94 2% | 44/1515 3% |
| Thymic Epithelial Tumor | 0/0 0% | 1/39 3% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 3/133 2% |
| Colorectal Carcinoma | 10/143 7% | 55/3239 2% |
| Melanoma | 3/210 1% | 37/1899 2% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Non-Small Cell Lung Carcinoma | 11/304 4% | 19/1390 1% |
| Gastric Carcinoma | 3/74 4% | 29/1809 2% |
| Cervical Carcinoma | 1/35 3% | 6/422 1% |
| Bladder Carcinoma | 1/58 2% | 14/956 1% |
| Squamous Cell Lung Carcinoma | 1/57 2% | 11/810 1% |
| Burkitts Lymphoma | 1/32 3% | 2/196 1% |
| Other Sarcomas | 5/69 7% | 3/699 0% |
| Hepatocellular Carcinoma | 4/46 9% | 19/2210 1% |
| Glioblastoma | 1/98 1% | 0/0 0% |
| Ovarian Carcinoma | 5/109 5% | 6/998 1% |
| Osteosarcoma | 2/45 4% | 0/166 0% |
| Medulloblastoma | 0/0 0% | 4/450 1% |
| Adrenocortical Carcinoma | 1/3 33% | 0/112 0% |
| Plasma Cell Myeloma | 0/44 0% | 3/305 1% |
| Neuroendocrine Tumour | 0/154 0% | 6/577 1% |
| Head and Neck Carcinoma | 0/85 0% | 12/1574 1% |
| Glioma | 0/52 0% | 15/2127 1% |
| Esophageal Carcinoma | 2/23 9% | 3/769 0% |
| Esophageal Squamous Cell Carcinoma | 4/51 8% | 12/2550 0% |
| Breast Carcinoma | 4/144 3% | 15/3264 0% |
Mutation Distribution
Where NOD1 is mutated · all tissues, split by cell line vs tissue
How many mutations in NOD1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 515 mutations in NOD1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|