Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 498 | 87 | 393 |
| Samples | 470 | 81 | 371 |
| Peptides | 373 | 55 | 312 |
Function
NUP133 · Nucleoporin 133
The nuclear envelope creates distinct nuclear and cytoplasmic compartments in eukaryotic cells. It consists of two concentric membranes perforated by nuclear pores, large protein complexes that form aqueous channels to regulate the flow of macromolecules between the nucleus and the cytoplasm. These complexes are composed of at least 100 different polypeptide subunits, many of which belong to the nucleoporin family. The nucleoporin protein encoded by this gene displays evolutionarily conserved interactions with other nucleoporins. This protein, which localizes to both sides of the nuclear pore complex at interphase, remains associated with the complex during mitosis and is targeted at early stages to the reforming nuclear envelope. This protein also localizes to kinetochores of mitotic cells. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
1 transcript · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000261396 | Q8WUM0 | 498 | 373 |
Gene Properties
Recurrent Mutations
All 373 amino-acid changes on canonical ENST00000261396 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in NUP133 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in NUP133 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 3/40 8% | 0/0 0% |
| Endometrial Carcinoma | 5/42 12% | 28/612 5% |
| Glioblastoma | 2/98 2% | 0/0 0% |
| Non-Small Cell Lung Carcinoma | 7/304 2% | 27/1390 2% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Neuroendocrine Tumour | 7/154 5% | 6/577 1% |
| Gastric Carcinoma | 1/74 1% | 32/1809 2% |
| Squamous Cell Lung Carcinoma | 2/57 4% | 12/810 1% |
| Melanoma | 3/210 1% | 30/1899 2% |
| Colorectal Carcinoma | 5/143 4% | 43/3239 1% |
| Burkitts Lymphoma | 0/32 0% | 3/196 2% |
| Hepatocellular Carcinoma | 2/46 4% | 26/2210 1% |
| Bladder Carcinoma | 1/58 2% | 11/956 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 9/752 1% |
| Thyroid Gland Carcinoma | 2/45 4% | 16/1592 1% |
| Germ Cell Tumour | 2/25 8% | 0/169 0% |
| Other Solid Cancers | 2/94 2% | 14/1515 1% |
| Esophageal Squamous Cell Carcinoma | 5/51 10% | 20/2550 1% |
| Mesothelioma | 1/62 2% | 1/165 1% |
| Breast Carcinoma | 9/144 6% | 17/3264 1% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 1/133 1% |
| Hodgkins Lymphoma | 0/16 0% | 1/122 1% |
| Ovarian Carcinoma | 2/109 2% | 6/998 1% |
| Biliary Tract Carcinoma | 0/54 0% | 7/950 1% |
| Head and Neck Carcinoma | 2/85 2% | 9/1574 1% |
| Non-Cancerous | 0/104 0% | 6/830 1% |
| Kidney Carcinoma | 5/85 6% | 7/1862 0% |
| Ewings Sarcoma | 2/63 3% | 0/262 0% |
| Prostate Carcinoma | 2/13 15% | 11/2105 1% |
| Other Sarcomas | 0/69 0% | 4/699 1% |
Mutation Distribution
Where NUP133 is mutated · all tissues, split by cell line vs tissue
How many mutations in NUP133 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 498 mutations in NUP133
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|