Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 842 | 110 | 722 |
| Samples | 353 | 63 | 285 |
| Peptides | 286 | 52 | 238 |
Function
PABPC1L · Poly(A) binding protein cytoplasmic 1 like
This gene belongs to the polyadenylate-binding protein type-1 family of proteins. Members of this family bind to the polyA tails of mRNAs to regulate mRNA stability and translation. The mouse ortholog of this gene is required for female fertility. In human, expression of a functional protein is regulated by alternative splicing. The protein-coding splice variant for this gene is abundantly expressed in human oocytes, while a noncoding splice variant subject to nonsense-mediated decay is the predominant splice variant expressed in somatic tissues. [provided by RefSeq, Aug 2019].
Isoforms & Proteins
5 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000255136 | A0ACI8IRP1* | 334 | 240 |
| ENST00000217073 | Q4VXU2 | 300 | 199 |
| ENST00000537323 | Q4VXU2-2 | 192 | 128 |
| ENST00000217074 | A0A6Q8JFV4* | 9 | 5 |
| ENST00000217075 | Q4VXT5* | 7 | 7 |
Gene Properties
Recurrent Mutations
All 199 amino-acid changes on canonical ENST00000217073 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PABPC1L · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PABPC1L – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Endometrial Carcinoma | 5/42 12% | 19/612 3% |
| T-Lymphoblastic Leukemia | 1/40 2% | 0/0 0% |
| Colorectal Carcinoma | 13/143 9% | 63/3239 2% |
| Rhabdomyosarcoma | 0/33 0% | 4/171 2% |
| Melanoma | 5/210 2% | 28/1899 1% |
| Small Cell Lung Carcinoma | 2/9 22% | 7/752 1% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 10/810 1% |
| Gastric Carcinoma | 2/74 3% | 19/1809 1% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Cervical Carcinoma | 0/35 0% | 5/422 1% |
| Germ Cell Tumour | 1/25 4% | 1/169 1% |
| Non-Small Cell Lung Carcinoma | 4/304 1% | 11/1390 1% |
| Burkitts Lymphoma | 2/32 6% | 0/196 0% |
| Other Solid Cancers | 1/94 1% | 13/1515 1% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 1/133 1% |
| Hodgkins Lymphoma | 0/16 0% | 1/122 1% |
| Bladder Carcinoma | 1/58 2% | 6/956 1% |
| Medulloblastoma | 0/0 0% | 3/450 1% |
| Head and Neck Carcinoma | 4/85 5% | 7/1574 0% |
| Other Sarcomas | 1/69 1% | 4/699 1% |
| Non-Cancerous | 0/104 0% | 6/830 1% |
| Hepatocellular Carcinoma | 0/46 0% | 13/2210 1% |
| Glioma | 3/52 6% | 9/2127 0% |
| Neuroendocrine Tumour | 2/154 1% | 2/577 0% |
| Esophageal Squamous Cell Carcinoma | 0/51 0% | 14/2550 1% |
| Biliary Tract Carcinoma | 0/54 0% | 5/950 1% |
| Osteosarcoma | 1/45 2% | 0/166 0% |
| Breast Carcinoma | 5/144 3% | 9/3264 0% |
| Meningioma | 0/3 0% | 1/252 0% |
Mutation Distribution
Where PABPC1L is mutated · all tissues, split by cell line vs tissue
How many mutations in PABPC1L were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 842 mutations in PABPC1L
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|