Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,400 | 220 | 1,165 |
| Samples | 620 | 147 | 466 |
| Peptides | 402 | 75 | 336 |
Function
PAX1 · Paired box 1
This gene is a member of the paired box (PAX) family of transcription factors. Members of the PAX family typically contain a paired box domain and a paired-type homeodomain. These genes play critical roles during fetal development. This gene plays a role in pattern formation during embryogenesis and may be essential for development of the vertebral column. This gene is silenced by methylation in ovarian and cervical cancers and may be a tumor suppressor gene. Mutations in this gene are also associated with vertebral malformations. [provided by RefSeq, Mar 2012].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000613128 | A0A087WXV5* | 530 | 302 |
| ENST00000398485 | P15863 | 475 | 318 |
| ENST00000444366 | P15863-2 | 395 | 291 |
Gene Properties
Recurrent Mutations
All 318 amino-acid changes on canonical ENST00000398485 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PAX1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PAX1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 7/40 18% | 0/0 0% |
| Acute Myeloid Leukemia | 7/90 8% | 0/0 0% |
| Endometrial Carcinoma | 13/42 31% | 26/612 4% |
| Hodgkins Lymphoma | 3/16 19% | 1/122 1% |
| Non-Small Cell Lung Carcinoma | 16/304 5% | 30/1390 2% |
| Unknown | 1/10 10% | 0/29 0% |
| Other Solid Cancers | 2/94 2% | 37/1515 2% |
| Gastric Carcinoma | 3/74 4% | 42/1809 2% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 3/133 2% |
| Colorectal Carcinoma | 18/143 13% | 58/3239 2% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 19/810 2% |
| Melanoma | 5/210 2% | 41/1899 2% |
| Glioblastoma | 2/98 2% | 0/0 0% |
| Esophageal Squamous Cell Carcinoma | 0/51 0% | 51/2550 2% |
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Cervical Carcinoma | 0/35 0% | 8/422 2% |
| Head and Neck Carcinoma | 3/85 4% | 23/1574 1% |
| Germ Cell Tumour | 2/25 8% | 1/169 1% |
| Esophageal Carcinoma | 2/23 9% | 10/769 1% |
| Non-Cancerous | 7/104 7% | 7/830 1% |
| Bladder Carcinoma | 1/58 2% | 13/956 1% |
| Small Cell Lung Carcinoma | 1/9 11% | 9/752 1% |
| Neuroendocrine Tumour | 8/154 5% | 1/577 0% |
| Chondrosarcoma | 1/14 7% | 0/75 0% |
| Ovarian Carcinoma | 8/109 7% | 4/998 0% |
| Other Sarcomas | 3/69 4% | 5/699 1% |
| Thyroid Gland Carcinoma | 5/45 11% | 12/1592 1% |
| Mesothelioma | 1/62 2% | 1/165 1% |
| Adrenocortical Carcinoma | 1/3 33% | 0/112 0% |
| Biliary Tract Carcinoma | 2/54 4% | 6/950 1% |
Mutation Distribution
Where PAX1 is mutated · all tissues, split by cell line vs tissue
How many mutations in PAX1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 23 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,400 mutations in PAX1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|