Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 513 | 56 | 444 |
| Samples | 441 | 50 | 382 |
| Peptides | 370 | 38 | 324 |
Function
PGBD1 · PiggyBac transposable element derived 1
The piggyBac family of proteins, found in diverse animals, are transposases related to the transposase of the canonical piggyBac transposon from the moth, Trichoplusia ni. This family also includes genes in several genomes, including human, that appear to have been derived from the piggyBac transposons. This gene belongs to the subfamily of piggyBac transposable element derived (PGBD) genes. The PGBD proteins appear to be novel, with no obvious relationship to other transposases, or other known protein families. This gene product is specifically expressed in the brain, however, its exact function is not known. Alternative splicing results in multiple transcript variants encoding the same protein.[provided by RefSeq, May 2010].
Isoforms & Proteins
2 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 357 amino-acid changes on canonical ENST00000259883 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PGBD1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PGBD1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Endometrial Carcinoma | 2/42 5% | 32/612 5% |
| T-Lymphoblastic Leukemia | 2/40 5% | 0/0 0% |
| Chronic Myelogenous Leukemia | 1/25 4% | 0/0 0% |
| Acute Monocytic Leukemia | 0/1 0% | 1/25 4% |
| Melanoma | 4/210 2% | 53/1899 3% |
| Bladder Carcinoma | 4/58 7% | 18/956 2% |
| Colorectal Carcinoma | 12/143 8% | 56/3239 2% |
| Non-Small Cell Lung Carcinoma | 3/304 1% | 29/1390 2% |
| Gastric Carcinoma | 2/74 3% | 30/1809 2% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 2/133 2% |
| Other Solid Cancers | 0/94 0% | 23/1515 2% |
| Cervical Carcinoma | 1/35 3% | 5/422 1% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 10/810 1% |
| Germ Cell Tumour | 0/25 0% | 2/169 1% |
| Rhabdomyosarcoma | 0/33 0% | 2/171 1% |
| Esophageal Squamous Cell Carcinoma | 2/51 4% | 23/2550 1% |
| Esophageal Carcinoma | 0/23 0% | 6/769 1% |
| Hepatocellular Carcinoma | 0/46 0% | 17/2210 1% |
| Hodgkins Lymphoma | 0/16 0% | 1/122 1% |
| Ovarian Carcinoma | 5/109 5% | 3/998 0% |
| Head and Neck Carcinoma | 1/85 1% | 11/1574 1% |
| Biliary Tract Carcinoma | 2/54 4% | 5/950 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 5/752 1% |
| Plasma Cell Myeloma | 2/44 5% | 0/305 0% |
| Pancreatic Carcinoma | 0/89 0% | 8/1611 0% |
| Glioma | 1/52 2% | 9/2127 0% |
| Neuroendocrine Tumour | 2/154 1% | 1/577 0% |
| Thyroid Gland Carcinoma | 0/45 0% | 6/1592 0% |
| Breast Carcinoma | 1/144 1% | 11/3264 0% |
| Kidney Carcinoma | 0/85 0% | 6/1862 0% |
Mutation Distribution
Where PGBD1 is mutated · all tissues, split by cell line vs tissue
How many mutations in PGBD1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 513 mutations in PGBD1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|