Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 3,300 | 386 | 2,851 |
| Samples | 671 | 140 | 514 |
| Peptides | 553 | 108 | 460 |
Function
PNPLA6 · Patatin like domain 6, lysophospholipase
This gene encodes a phospholipase that deacetylates intracellular phosphatidylcholine to produce glycerophosphocholine. It is thought to function in neurite outgrowth and process elongation during neuronal differentiation. The protein is anchored to the cytoplasmic face of the endoplasmic reticulum in both neurons and non-neuronal cells. Mutations in this gene result in autosomal recessive spastic paraplegia, and the protein is the target for neurodegeneration induced by organophosphorus compounds and chemical warfare agents. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2009].
Isoforms & Proteins
5 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000600737 | A0A384DVU0* | 758 | 520 |
| ENST00000414982 | Q8IY17 | 646 | 477 |
| ENST00000221249 | Q8IY17-2 | 640 | 473 |
| ENST00000450331 | Q8IY17-2 | 636 | 469 |
| ENST00000545201 | Q8IY17-5 | 620 | 456 |
Gene Properties
Recurrent Mutations
All 477 amino-acid changes on canonical ENST00000414982 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PNPLA6 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PNPLA6 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 9/40 22% | 0/0 0% |
| Chronic Myelogenous Leukemia | 3/25 12% | 0/0 0% |
| Endometrial Carcinoma | 6/42 14% | 28/612 5% |
| Glioblastoma | 4/98 4% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| Gastric Carcinoma | 8/74 11% | 58/1809 3% |
| Melanoma | 4/210 2% | 67/1899 4% |
| Colorectal Carcinoma | 25/143 17% | 77/3239 2% |
| Rhabdomyosarcoma | 5/33 15% | 0/171 0% |
| Bladder Carcinoma | 3/58 5% | 18/956 2% |
| Non-Small Cell Lung Carcinoma | 10/304 3% | 24/1390 2% |
| Neuroendocrine Tumour | 6/154 4% | 7/577 1% |
| Ovarian Carcinoma | 9/109 8% | 9/998 1% |
| Squamous Cell Lung Carcinoma | 1/57 2% | 13/810 2% |
| Cervical Carcinoma | 2/35 6% | 5/422 1% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 2/133 2% |
| Head and Neck Carcinoma | 3/85 4% | 21/1574 1% |
| Other Solid Cancers | 2/94 2% | 20/1515 1% |
| Thyroid Gland Carcinoma | 0/45 0% | 22/1592 1% |
| Esophageal Squamous Cell Carcinoma | 4/51 8% | 29/2550 1% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Non-Cancerous | 1/104 1% | 9/830 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 8/752 1% |
| Biliary Tract Carcinoma | 1/54 2% | 9/950 1% |
| Hepatocellular Carcinoma | 2/46 4% | 18/2210 1% |
| Adrenocortical Carcinoma | 0/3 0% | 1/112 1% |
| Glioma | 2/52 4% | 16/2127 1% |
| Pancreatic Carcinoma | 3/89 3% | 11/1611 1% |
| Other Sarcomas | 1/69 1% | 5/699 1% |
Mutation Distribution
Where PNPLA6 is mutated · all tissues, split by cell line vs tissue
How many mutations in PNPLA6 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 3,300 mutations in PNPLA6
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|