Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 266 | 54 | 196 |
| Samples | 246 | 51 | 187 |
| Peptides | 194 | 33 | 154 |
Function
PRELP · Proline and arginine rich end leucine rich repeat protein
The protein encoded by this gene is a leucine-rich repeat protein present in connective tissue extracellular matrix. This protein functions as a molecule anchoring basement membranes to the underlying connective tissue. This protein has been shown to bind type I collagen to basement membranes and type II collagen to cartilage. It also binds the basement membrane heparan sulfate proteoglycan perlecan. This protein is suggested to be involved in the pathogenesis of Hutchinson-Gilford progeria (HGP), which is reported to lack the binding of collagen in basement membranes and cartilage. Alternatively spliced transcript variants encoding the same protein have been observed. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
1 transcript · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000343110 | P51888 | 266 | 194 |
Gene Properties
Recurrent Mutations
All 194 amino-acid changes on canonical ENST00000343110 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PRELP · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PRELP – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Endometrial Carcinoma | 3/42 7% | 15/612 2% |
| Germ Cell Tumour | 2/25 8% | 2/169 1% |
| Non-Small Cell Lung Carcinoma | 8/304 3% | 19/1390 1% |
| Hodgkins Lymphoma | 2/16 12% | 0/122 0% |
| Pheochromocytoma and Paraganglioma | 0/0 0% | 1/71 1% |
| Melanoma | 2/210 1% | 22/1899 1% |
| Colorectal Carcinoma | 4/143 3% | 34/3239 1% |
| Other Solid Cancers | 3/94 3% | 14/1515 1% |
| Adrenocortical Carcinoma | 0/3 0% | 1/112 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 6/752 1% |
| Non-Cancerous | 1/104 1% | 6/830 1% |
| Neuroendocrine Tumour | 4/154 3% | 1/577 0% |
| Gastric Carcinoma | 1/74 1% | 11/1809 1% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 5/810 1% |
| Other Sarcomas | 2/69 3% | 2/699 0% |
| Glioma | 1/52 2% | 9/2127 0% |
| Ovarian Carcinoma | 2/109 2% | 3/998 0% |
| Cervical Carcinoma | 0/35 0% | 2/422 0% |
| Wilms Tumour | 0/5 0% | 2/474 0% |
| Biliary Tract Carcinoma | 1/54 2% | 3/950 0% |
| Esophageal Carcinoma | 0/23 0% | 3/769 0% |
| Head and Neck Carcinoma | 1/85 1% | 5/1574 0% |
| Ewings Sarcoma | 0/63 0% | 1/262 0% |
| Pancreatic Carcinoma | 1/89 1% | 4/1611 0% |
| Breast Carcinoma | 1/144 1% | 7/3264 0% |
| Hepatocellular Carcinoma | 0/46 0% | 5/2210 0% |
| Bladder Carcinoma | 1/58 2% | 1/956 0% |
| B-Cell Non-Hodgkins Lymphoma | 4/88 5% | 1/2534 0% |
| Prostate Carcinoma | 2/13 15% | 2/2105 0% |
| Thyroid Gland Carcinoma | 2/45 4% | 1/1592 0% |
Mutation Distribution
Where PRELP is mutated · all tissues, split by cell line vs tissue
How many mutations in PRELP were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 266 mutations in PRELP
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|