Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 931 | 157 | 756 |
| Samples | 397 | 93 | 297 |
| Peptides | 294 | 58 | 250 |
Function
PRF1 · Perforin 1
This gene encodes a protein with structural similarities to complement component C9 that is important in immunity. This protein forms membrane pores that allow the release of granzymes and subsequent cytolysis of target cells. Whether pore formation occurs in the plasma membrane of target cells or in an endosomal membrane inside target cells is subject to debate. Mutations in this gene are associated with a variety of human disease including diabetes, multiple sclerosis, lymphomas, autoimmune lymphoproliferative syndrome (ALPS), aplastic anemia, and familial hemophagocytic lymphohistiocytosis type 2 (FHL2), a rare and lethal autosomal recessive disorder of early childhood. [provided by RefSeq, Aug 2017].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000441259 | P14222 | 426 | 287 |
| ENST00000373209 | P14222 | 368 | 272 |
| ENST00000638674 | A0A1W2PR25* | 137 | 106 |
Gene Properties
Recurrent Mutations
All 287 amino-acid changes on canonical ENST00000441259 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PRF1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PRF1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 5/40 12% | 0/0 0% |
| Oral Cavity Carcinoma | 5/54 9% | 0/0 0% |
| Chronic Myelogenous Leukemia | 2/25 8% | 0/0 0% |
| Acute Monocytic Leukemia | 1/1 100% | 0/25 0% |
| Endometrial Carcinoma | 2/42 5% | 18/612 3% |
| Unknown | 1/10 10% | 0/29 0% |
| Melanoma | 4/210 2% | 48/1899 3% |
| Hodgkins Lymphoma | 0/16 0% | 3/122 2% |
| Gastric Carcinoma | 3/74 4% | 33/1809 2% |
| Neuroendocrine Tumour | 9/154 6% | 4/577 1% |
| Squamous Cell Lung Carcinoma | 3/57 5% | 12/810 1% |
| Colorectal Carcinoma | 12/143 8% | 39/3239 1% |
| Bladder Carcinoma | 2/58 3% | 11/956 1% |
| Non-Small Cell Lung Carcinoma | 8/304 3% | 12/1390 1% |
| Rhabdomyosarcoma | 1/33 3% | 1/171 1% |
| Small Cell Lung Carcinoma | 2/9 22% | 5/752 1% |
| Other Sarcomas | 5/69 7% | 2/699 0% |
| Ovarian Carcinoma | 4/109 4% | 6/998 1% |
| Head and Neck Carcinoma | 3/85 4% | 12/1574 1% |
| Cervical Carcinoma | 0/35 0% | 4/422 1% |
| Adrenocortical Carcinoma | 0/3 0% | 1/112 1% |
| Plasma Cell Myeloma | 3/44 7% | 0/305 0% |
| Other Solid Cancers | 1/94 1% | 12/1515 1% |
| Non-Cancerous | 0/104 0% | 6/830 1% |
| Glioma | 0/52 0% | 13/2127 1% |
| Germ Cell Tumour | 0/25 0% | 1/169 1% |
| Biliary Tract Carcinoma | 0/54 0% | 5/950 1% |
| Thyroid Gland Carcinoma | 2/45 4% | 6/1592 0% |
| Osteosarcoma | 1/45 2% | 0/166 0% |
| Hepatocellular Carcinoma | 1/46 2% | 9/2210 0% |
Mutation Distribution
Where PRF1 is mutated · all tissues, split by cell line vs tissue
How many mutations in PRF1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 53 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 931 mutations in PRF1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|