Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 2,060 | 455 | 1,588 |
| Samples | 884 | 223 | 651 |
| Peptides | 806 | 168 | 651 |
Function
PRRC2A · Proline rich coiled-coil 2A
A cluster of genes, BAT1-BAT5, has been localized in the vicinity of the genes for TNF alpha and TNF beta. These genes are all within the human major histocompatibility complex class III region. This gene has microsatellite repeats which are associated with the age-at-onset of insulin-dependent diabetes mellitus (IDDM) and possibly thought to be involved with the inflammatory process of pancreatic beta-cell destruction during the development of IDDM. This gene is also a candidate gene for the development of rheumatoid arthritis. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Dec 2010].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 804 amino-acid changes on canonical ENST00000376033 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PRRC2A · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PRRC2A – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 14/40 35% | 0/0 0% |
| Chronic Myelogenous Leukemia | 4/25 16% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 2/26 8% | 0/0 0% |
| Melanoma | 14/210 7% | 110/1899 6% |
| Endometrial Carcinoma | 9/42 21% | 28/612 5% |
| Oral Cavity Carcinoma | 3/54 6% | 0/0 0% |
| Chordoma | 0/7 0% | 1/13 8% |
| Glioblastoma | 4/98 4% | 0/0 0% |
| Cervical Carcinoma | 2/35 6% | 15/422 4% |
| Other Solid Cancers | 8/94 9% | 51/1515 3% |
| Bladder Carcinoma | 6/58 10% | 30/956 3% |
| Colorectal Carcinoma | 27/143 19% | 89/3239 3% |
| Gastric Carcinoma | 10/74 14% | 49/1809 3% |
| Germ Cell Tumour | 3/25 12% | 3/169 2% |
| Non-Small Cell Lung Carcinoma | 22/304 7% | 25/1390 2% |
| Thyroid Gland Carcinoma | 1/45 2% | 37/1592 2% |
| Head and Neck Carcinoma | 5/85 6% | 32/1574 2% |
| Acute Myeloid Leukemia | 2/90 2% | 0/0 0% |
| Squamous Cell Lung Carcinoma | 3/57 5% | 16/810 2% |
| Hodgkins Lymphoma | 0/16 0% | 3/122 2% |
| Esophageal Carcinoma | 1/23 4% | 13/769 2% |
| Burkitts Lymphoma | 3/32 9% | 1/196 1% |
| Other Sarcomas | 5/69 7% | 7/699 1% |
| Ovarian Carcinoma | 6/109 6% | 10/998 1% |
| Biliary Tract Carcinoma | 3/54 6% | 9/950 1% |
| Chondrosarcoma | 1/14 7% | 0/75 0% |
| Esophageal Squamous Cell Carcinoma | 10/51 20% | 15/2550 1% |
| Neuroendocrine Tumour | 5/154 3% | 2/577 0% |
| Glioma | 2/52 4% | 19/2127 1% |
| Osteosarcoma | 1/45 2% | 1/166 1% |
Mutation Distribution
Where PRRC2A is mutated · all tissues, split by cell line vs tissue
How many mutations in PRRC2A were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 2,060 mutations in PRRC2A
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|