Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 3,176 | 398 | 2,682 |
| Samples | 467 | 79 | 376 |
| Peptides | 441 | 68 | 373 |
Function
PUM1 · Pumilio RNA binding family member 1
This gene encodes a member of the PUF family, evolutionarily conserved RNA-binding proteins related to the Pumilio proteins of Drosophila and the fem-3 mRNA binding factor proteins of C. elegans. The encoded protein contains a sequence-specific RNA binding domain comprised of eight repeats and N- and C-terminal flanking regions, and serves as a translational regulator of specific mRNAs by binding to their 3' untranslated regions. The evolutionarily conserved function of the encoded protein in invertebrates and lower vertebrates suggests that the human protein may be involved in translational regulation of embryogenesis, and cell development and differentiation. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
7 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 385 amino-acid changes on canonical ENST00000426105 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in PUM1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in PUM1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 6/40 15% | 0/0 0% |
| Oral Cavity Carcinoma | 4/54 7% | 0/0 0% |
| Endometrial Carcinoma | 6/42 14% | 25/612 4% |
| Acute Monocytic Leukemia | 1/1 100% | 0/25 0% |
| Cervical Carcinoma | 0/35 0% | 13/422 3% |
| Melanoma | 5/210 2% | 48/1899 3% |
| Colorectal Carcinoma | 13/143 9% | 57/3239 2% |
| Ovarian Carcinoma | 3/109 3% | 13/998 1% |
| Hodgkins Lymphoma | 0/16 0% | 2/122 2% |
| Non-Small Cell Lung Carcinoma | 11/304 4% | 13/1390 1% |
| Hepatocellular Carcinoma | 1/46 2% | 28/2210 1% |
| Squamous Cell Lung Carcinoma | 1/57 2% | 10/810 1% |
| Gastric Carcinoma | 2/74 3% | 19/1809 1% |
| Other Solid Cancers | 1/94 1% | 17/1515 1% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Bladder Carcinoma | 1/58 2% | 9/956 1% |
| Neuroendocrine Tumour | 2/154 1% | 5/577 1% |
| Other Sarcomas | 2/69 3% | 5/699 1% |
| Kidney Carcinoma | 5/85 6% | 12/1862 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 6/752 1% |
| Head and Neck Carcinoma | 0/85 0% | 13/1574 1% |
| Glioma | 0/52 0% | 17/2127 1% |
| Biliary Tract Carcinoma | 0/54 0% | 6/950 1% |
| Plasma Cell Myeloma | 1/44 2% | 1/305 0% |
| Non-Cancerous | 1/104 1% | 4/830 0% |
| Breast Carcinoma | 3/144 2% | 15/3264 0% |
| Germ Cell Tumour | 0/25 0% | 1/169 1% |
| Prostate Carcinoma | 1/13 8% | 10/2105 0% |
| Esophageal Carcinoma | 0/23 0% | 4/769 1% |
| Rhabdomyosarcoma | 1/33 3% | 0/171 0% |
Mutation Distribution
Where PUM1 is mutated · all tissues, split by cell line vs tissue
How many mutations in PUM1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 3,176 mutations in PUM1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|