Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 60 | 33 | 0 |
| Samples | 41 | 29 | 0 |
| Peptides | 58 | 31 | 0 |
Function
RIGI · RNA sensor RIG-I
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases which are implicated in a number of cellular processes involving RNA binding and alteration of RNA secondary structure. This gene encodes a protein containing RNA helicase-DEAD box protein motifs and a caspase recruitment domain (CARD). It is involved in viral double-stranded (ds) RNA recognition and the regulation of the antiviral innate immune response. Mutations in this gene are associated with Singleton-Merten syndrome 2. [provided by RefSeq, Aug 2020].
Isoforms & Proteins
2 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 56 amino-acid changes on canonical ENST00000379883 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in RIGI · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in RIGI – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Oral Cavity Carcinoma | 1/54 2% | 0/0 0% |
| Endometrial Carcinoma | 3/42 7% | 1/612 0% |
| Cervical Carcinoma | 1/35 3% | 1/422 0% |
| Ewings Sarcoma | 1/63 2% | 0/262 0% |
| Melanoma | 5/210 2% | 1/1899 0% |
| Neuroendocrine Tumour | 2/154 1% | 0/577 0% |
| Non-Small Cell Lung Carcinoma | 1/304 0% | 2/1390 0% |
| Colorectal Carcinoma | 4/143 3% | 2/3239 0% |
| Ovarian Carcinoma | 1/109 1% | 1/998 0% |
| Biliary Tract Carcinoma | 1/54 2% | 0/950 0% |
| Bladder Carcinoma | 1/58 2% | 0/956 0% |
| Glioma | 2/52 4% | 0/2127 0% |
| Neuroblastoma | 1/87 1% | 0/1331 0% |
| Other Blood Cancers | 2/61 3% | 0/2725 0% |
| Other Solid Cancers | 1/94 1% | 0/1515 0% |
| Head and Neck Carcinoma | 0/85 0% | 1/1574 0% |
| Pancreatic Carcinoma | 1/89 1% | 0/1611 0% |
| Gastric Carcinoma | 0/74 0% | 1/1809 0% |
| Prostate Carcinoma | 1/13 8% | 0/2105 0% |
| Kidney Carcinoma | 0/85 0% | 1/1862 0% |
| Hepatocellular Carcinoma | 0/46 0% | 1/2210 0% |
Mutation Distribution
Where RIGI is mutated · all tissues, split by cell line vs tissue
How many mutations in RIGI were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
Mutations
All 60 mutations in RIGI
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|