Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 755 | 124 | 620 |
| Samples | 378 | 78 | 295 |
| Peptides | 308 | 54 | 255 |
Function
SCYL2 · SCY1 like pseudokinase 2
The protein encoded by this gene associates with clathrin-coated complexes at the plasma membrane and with endocytic coated vesicles. The encoded protein phosphorylates the beta2 subunit of the plasma membrane adapter complex AP2 and interacts with clathrin, showing involvement in clathrin-dependent pathways between the trans-Golgi network and the endosomal system. In addition, this protein has a role in the Wnt signaling pathway by targeting frizzled 5 (Fzd5) for lysosomal degradation. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Dec 2015].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000360820 | Q6P3W7 | 402 | 302 |
| ENST00000635101 | A0A0U1RQQ9* | 352 | 279 |
| ENST00000549687 | F8VSC5* | 1 | 1 |
Gene Properties
Recurrent Mutations
All 302 amino-acid changes on canonical ENST00000360820 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in SCYL2 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in SCYL2 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Chronic Myelogenous Leukemia | 1/25 4% | 0/0 0% |
| Endometrial Carcinoma | 9/42 21% | 14/612 2% |
| Glioblastoma | 3/98 3% | 0/0 0% |
| Non-Small Cell Lung Carcinoma | 8/304 3% | 23/1390 2% |
| Colorectal Carcinoma | 14/143 10% | 46/3239 1% |
| Melanoma | 8/210 4% | 29/1899 2% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 15/810 2% |
| Hodgkins Lymphoma | 0/16 0% | 2/122 2% |
| Plasma Cell Myeloma | 2/44 5% | 2/305 1% |
| Neuroendocrine Tumour | 8/154 5% | 0/577 0% |
| Other Solid Cancers | 2/94 2% | 15/1515 1% |
| Germ Cell Tumour | 0/25 0% | 2/169 1% |
| Bladder Carcinoma | 1/58 2% | 9/956 1% |
| Cervical Carcinoma | 1/35 3% | 3/422 1% |
| Esophageal Carcinoma | 2/23 9% | 5/769 1% |
| Gastric Carcinoma | 3/74 4% | 12/1809 1% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 1/133 1% |
| Kidney Carcinoma | 1/85 1% | 13/1862 1% |
| Ovarian Carcinoma | 2/109 2% | 6/998 1% |
| Thyroid Gland Carcinoma | 0/45 0% | 11/1592 1% |
| Head and Neck Carcinoma | 3/85 4% | 7/1574 0% |
| Prostate Carcinoma | 0/13 0% | 12/2105 1% |
| Breast Carcinoma | 2/144 1% | 17/3264 1% |
| Hepatocellular Carcinoma | 1/46 2% | 11/2210 0% |
| Rhabdomyosarcoma | 0/33 0% | 1/171 1% |
| Medulloblastoma | 0/0 0% | 2/450 0% |
| Non-Cancerous | 0/104 0% | 4/830 0% |
| Pancreatic Carcinoma | 0/89 0% | 7/1611 0% |
| Biliary Tract Carcinoma | 0/54 0% | 4/950 0% |
| Other Sarcomas | 1/69 1% | 2/699 0% |
Mutation Distribution
Where SCYL2 is mutated · all tissues, split by cell line vs tissue
How many mutations in SCYL2 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 755 mutations in SCYL2
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|