Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 4,983 | 447 | 4,495 |
| Samples | 775 | 139 | 627 |
| Peptides | 660 | 102 | 570 |
Function
SMARCA2 · SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2
The protein encoded by this gene is a member of the SWI/SNF family of proteins and is highly similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. Alternatively spliced transcript variants encoding different isoforms have been found for this gene, which contains a trinucleotide repeat (CAG) length polymorphism. [provided by RefSeq, Jan 2014].
Isoforms & Proteins
17 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000349721 | P51531 | 835 | 607 |
| ENST00000382203 | P51531 | 734 | 566 |
| ENST00000357248 | P51531-2 | 730 | 561 |
| ENST00000382194 | P51531-2 | 727 | 559 |
| ENST00000450198 | F6VDE0* | 703 | 539 |
| ENST00000636559 | A0A1B0GWA8* | 116 | 95 |
| ENST00000637806 | A0A1B0GWA8* | 116 | 95 |
| ENST00000636903 | A0A1B0GU54* | 107 | 90 |
| ENST00000637103 | A0A1B0GU54* | 107 | 90 |
| ENST00000302401 | B1ALF6* | 106 | 79 |
| ENST00000382185 | B4DNT1* | 106 | 79 |
| ENST00000417599 | B4DNT1* | 106 | 79 |
| ENST00000382186 | B1ALG2* | 100 | 75 |
| ENST00000634931 | B1ALG2* | 100 | 75 |
| ENST00000634781 | A0A0U1RR26* | 99 | 72 |
| ENST00000324954 | F6T8Q0* | 98 | 71 |
| ENST00000382183 | B1ALG1* | 93 | 68 |
Gene Properties
Recurrent Mutations
All 607 amino-acid changes on canonical ENST00000349721 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in SMARCA2 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in SMARCA2 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 7/40 18% | 0/0 0% |
| Chronic Myelogenous Leukemia | 2/25 8% | 0/0 0% |
| Endometrial Carcinoma | 7/42 17% | 45/612 7% |
| Bladder Carcinoma | 5/58 9% | 35/956 4% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| Colorectal Carcinoma | 29/143 20% | 88/3239 3% |
| Melanoma | 7/210 3% | 63/1899 3% |
| Glioblastoma | 3/98 3% | 0/0 0% |
| Gastric Carcinoma | 2/74 3% | 52/1809 3% |
| Cervical Carcinoma | 4/35 11% | 9/422 2% |
| Non-Small Cell Lung Carcinoma | 10/304 3% | 34/1390 2% |
| Thymic Epithelial Tumor | 0/0 0% | 1/39 3% |
| Acute Myeloid Leukemia | 2/90 2% | 0/0 0% |
| Ovarian Carcinoma | 7/109 6% | 17/998 2% |
| Hepatocellular Carcinoma | 0/46 0% | 42/2210 2% |
| Head and Neck Carcinoma | 4/85 5% | 24/1574 2% |
| Other Solid Cancers | 4/94 4% | 23/1515 2% |
| Squamous Cell Lung Carcinoma | 2/57 4% | 12/810 1% |
| Ewings Sarcoma | 4/63 6% | 1/262 0% |
| Esophageal Carcinoma | 2/23 9% | 10/769 1% |
| Non-Cancerous | 0/104 0% | 14/830 2% |
| Rhabdomyosarcoma | 2/33 6% | 1/171 1% |
| Hodgkins Lymphoma | 1/16 6% | 1/122 1% |
| Pheochromocytoma and Paraganglioma | 0/0 0% | 1/71 1% |
| Burkitts Lymphoma | 2/32 6% | 1/196 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 10/752 1% |
| Neuroendocrine Tumour | 2/154 1% | 7/577 1% |
| Other Sarcomas | 2/69 3% | 7/699 1% |
| Chondrosarcoma | 0/14 0% | 1/75 1% |
| Biliary Tract Carcinoma | 1/54 2% | 10/950 1% |
Mutation Distribution
Where SMARCA2 is mutated · all tissues, split by cell line vs tissue
How many mutations in SMARCA2 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 4,983 mutations in SMARCA2
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|