Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 1,408 | 222 | 1,161 |
| Samples | 1,150 | 189 | 938 |
| Peptides | 954 | 153 | 824 |
Function
SORCS1 · Sortilin related VPS10 domain containing receptor 1
This gene encodes one family member of vacuolar protein sorting 10 (VPS10) domain-containing receptor proteins. The VPS10 domain name comes from the yeast carboxypeptidase Y sorting receptor Vps10 protein. Members of this gene family are large with many exons but the CDS lengths are usually less than 3700 nt. Very large introns typically separate the exons encoding the VPS10 domain; the remaining exons are separated by much smaller-sized introns. These genes are strongly expressed in the central nervous system. Two of the five family members (sortilin and sortilin-related receptor) are synthesized as preproproteins; it is not yet known if this encoded protein is also a preproprotein. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
2 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 931 amino-acid changes on canonical ENST00000263054 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in SORCS1 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in SORCS1 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 7/40 18% | 0/0 0% |
| Endometrial Carcinoma | 8/42 19% | 51/612 8% |
| Squamous Cell Lung Carcinoma | 4/57 7% | 67/810 8% |
| Non-Small Cell Lung Carcinoma | 24/304 8% | 101/1390 7% |
| Gastric Carcinoma | 8/74 11% | 97/1809 5% |
| Oral Cavity Carcinoma | 3/54 6% | 0/0 0% |
| Hodgkins Lymphoma | 2/16 12% | 4/122 3% |
| Esophageal Carcinoma | 2/23 9% | 31/769 4% |
| Small Cell Lung Carcinoma | 3/9 33% | 28/752 4% |
| Chronic Myelogenous Leukemia | 1/25 4% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Melanoma | 8/210 4% | 72/1899 4% |
| Colorectal Carcinoma | 20/143 14% | 101/3239 3% |
| Other Solid Cancers | 0/94 0% | 57/1515 4% |
| Burkitts Lymphoma | 8/32 25% | 0/196 0% |
| Bladder Carcinoma | 6/58 10% | 24/956 3% |
| Neuroendocrine Tumour | 13/154 8% | 7/577 1% |
| Head and Neck Carcinoma | 2/85 2% | 43/1574 3% |
| Cervical Carcinoma | 1/35 3% | 10/422 2% |
| Esophageal Squamous Cell Carcinoma | 8/51 16% | 44/2550 2% |
| Hepatocellular Carcinoma | 5/46 11% | 38/2210 2% |
| Retinoblastoma | 1/27 4% | 0/30 0% |
| Biliary Tract Carcinoma | 5/54 9% | 12/950 1% |
| Ovarian Carcinoma | 8/109 7% | 10/998 1% |
| Plasma Cell Myeloma | 0/44 0% | 5/305 2% |
| Other Sarcomas | 2/69 3% | 9/699 1% |
| Non-Cancerous | 3/104 3% | 8/830 1% |
| Thyroid Gland Carcinoma | 2/45 4% | 17/1592 1% |
| Pancreatic Carcinoma | 3/89 3% | 16/1611 1% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
Mutation Distribution
Where SORCS1 is mutated · all tissues, split by cell line vs tissue
How many mutations in SORCS1 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 1,408 mutations in SORCS1
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|