Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 604 | 105 | 493 |
| Samples | 280 | 69 | 206 |
| Peptides | 229 | 41 | 187 |
Function
SRP72 · Signal recognition particle 72
This gene encodes the 72 kDa subunit of the signal recognition particle (SRP), a ribonucleoprotein complex that mediates the targeting of secretory proteins to the endoplasmic reticulum (ER). The SRP complex consists of a 7S RNA and 6 protein subunits: SRP9, SRP14, SRP19, SRP54, SRP68, and SRP72, that are bound to the 7S RNA as monomers or heterodimers. SRP has at least 3 distinct functions that can be associated with the protein subunits: signal recognition, translational arrest, and ER membrane targeting by interaction with the docking protein. Mutations in this gene are associated with familial bone marrow failure. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2012].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 213 amino-acid changes on canonical ENST00000642900 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in SRP72 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in SRP72 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 4/40 10% | 0/0 0% |
| Acute Myeloid Leukemia | 7/90 8% | 0/0 0% |
| Chronic Myelogenous Leukemia | 1/25 4% | 0/0 0% |
| Endometrial Carcinoma | 4/42 10% | 16/612 3% |
| Glioblastoma | 2/98 2% | 0/0 0% |
| Plasma Cell Myeloma | 2/44 5% | 3/305 1% |
| Bladder Carcinoma | 0/58 0% | 14/956 1% |
| Gastric Carcinoma | 2/74 3% | 22/1809 1% |
| Melanoma | 1/210 0% | 25/1899 1% |
| Cervical Carcinoma | 2/35 6% | 3/422 1% |
| Non-Small Cell Lung Carcinoma | 5/304 2% | 13/1390 1% |
| Squamous Cell Lung Carcinoma | 3/57 5% | 6/810 1% |
| Colorectal Carcinoma | 9/143 6% | 20/3239 1% |
| Neuroendocrine Tumour | 1/154 1% | 4/577 1% |
| Ovarian Carcinoma | 3/109 3% | 4/998 0% |
| Kidney Carcinoma | 3/85 4% | 9/1862 0% |
| Hepatocellular Carcinoma | 0/46 0% | 13/2210 1% |
| Thyroid Gland Carcinoma | 0/45 0% | 9/1592 1% |
| Non-Cancerous | 1/104 1% | 4/830 0% |
| Small Cell Lung Carcinoma | 0/9 0% | 4/752 1% |
| Germ Cell Tumour | 0/25 0% | 1/169 1% |
| Pancreatic Carcinoma | 6/89 7% | 2/1611 0% |
| Burkitts Lymphoma | 0/32 0% | 1/196 1% |
| Esophageal Carcinoma | 0/23 0% | 3/769 0% |
| Head and Neck Carcinoma | 2/85 2% | 4/1574 0% |
| Glioma | 0/52 0% | 7/2127 0% |
| Ewings Sarcoma | 1/63 2% | 0/262 0% |
| Breast Carcinoma | 4/144 3% | 6/3264 0% |
| Other Sarcomas | 0/69 0% | 2/699 0% |
| Other Solid Cancers | 1/94 1% | 3/1515 0% |
Mutation Distribution
Where SRP72 is mutated · all tissues, split by cell line vs tissue
How many mutations in SRP72 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 604 mutations in SRP72
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|