Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 850 | 164 | 667 |
| Samples | 338 | 79 | 244 |
| Peptides | 253 | 55 | 208 |
Function
SYNCRIP · Synaptotagmin binding cytoplasmic RNA interacting protein
This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 20. [provided by RefSeq, Dec 2011].
Isoforms & Proteins
3 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 239 amino-acid changes on canonical ENST00000369622 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in SYNCRIP · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in SYNCRIP – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 5/40 12% | 0/0 0% |
| Endometrial Carcinoma | 2/42 5% | 23/612 4% |
| Acute Myeloid Leukemia | 3/90 3% | 0/0 0% |
| Burkitts Lymphoma | 5/32 16% | 0/196 0% |
| Glioblastoma | 2/98 2% | 0/0 0% |
| Colorectal Carcinoma | 16/143 11% | 46/3239 1% |
| Non-Small Cell Lung Carcinoma | 11/304 4% | 19/1390 1% |
| Squamous Cell Lung Carcinoma | 3/57 5% | 9/810 1% |
| Gastric Carcinoma | 2/74 3% | 20/1809 1% |
| Neuroendocrine Tumour | 6/154 4% | 2/577 0% |
| Cervical Carcinoma | 0/35 0% | 5/422 1% |
| Head and Neck Carcinoma | 1/85 1% | 16/1574 1% |
| Other Solid Cancers | 2/94 2% | 12/1515 1% |
| Melanoma | 0/210 0% | 17/1899 1% |
| Esophageal Squamous Cell Carcinoma | 2/51 4% | 19/2550 1% |
| Thyroid Gland Carcinoma | 4/45 9% | 7/1592 0% |
| Esophageal Carcinoma | 0/23 0% | 5/769 1% |
| Ewings Sarcoma | 2/63 3% | 0/262 0% |
| Biliary Tract Carcinoma | 0/54 0% | 6/950 1% |
| Plasma Cell Myeloma | 2/44 5% | 0/305 0% |
| Other Sarcomas | 0/69 0% | 4/699 1% |
| Glioma | 0/52 0% | 11/2127 1% |
| Osteosarcoma | 1/45 2% | 0/166 0% |
| Small Cell Lung Carcinoma | 0/9 0% | 3/752 0% |
| Ovarian Carcinoma | 2/109 2% | 2/998 0% |
| Breast Carcinoma | 3/144 2% | 9/3264 0% |
| Non-Cancerous | 1/104 1% | 2/830 0% |
| Hepatocellular Carcinoma | 0/46 0% | 7/2210 0% |
| B-Cell Non-Hodgkins Lymphoma | 2/88 2% | 3/2534 0% |
| Prostate Carcinoma | 2/13 15% | 2/2105 0% |
Mutation Distribution
Where SYNCRIP is mutated · all tissues, split by cell line vs tissue
How many mutations in SYNCRIP were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 850 mutations in SYNCRIP
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|