Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 393 | 96 | 290 |
| Samples | 355 | 85 | 265 |
| Peptides | 270 | 57 | 220 |
Function
TBL3 · Transducin beta like 3
The protein encoded by this gene has sequence similarity with members of the WD40 repeat-containing protein family. The WD40 group is a large family of proteins, which appear to have a regulatory function. It is believed that the WD40 repeats mediate protein-protein interactions and members of the family are involved in signal transduction, RNA processing, gene regulation, vesicular trafficking, cytoskeletal assembly and may play a role in the control of cytotypic differentiation. This gene has multiple polyadenylation sites. It might have multiple alternatively spliced transcript variants but the variants have not been fully described yet. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
1 transcript · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000568546 | Q12788 | 393 | 270 |
Gene Properties
Recurrent Mutations
All 270 amino-acid changes on canonical ENST00000568546 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in TBL3 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in TBL3 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 6/40 15% | 0/0 0% |
| Chronic Myelogenous Leukemia | 2/25 8% | 0/0 0% |
| T-Cell Non-Hodgkins Lymphoma | 1/26 4% | 0/0 0% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| Endometrial Carcinoma | 9/42 21% | 10/612 2% |
| Thymic Epithelial Tumor | 0/0 0% | 1/39 3% |
| Osteosarcoma | 3/45 7% | 1/166 1% |
| Burkitts Lymphoma | 0/32 0% | 4/196 2% |
| Melanoma | 2/210 1% | 27/1899 1% |
| Colorectal Carcinoma | 9/143 6% | 35/3239 1% |
| Gastric Carcinoma | 3/74 4% | 21/1809 1% |
| Other Sarcomas | 4/69 6% | 5/699 1% |
| Cervical Carcinoma | 1/35 3% | 4/422 1% |
| Bladder Carcinoma | 2/58 3% | 8/956 1% |
| Esophageal Squamous Cell Carcinoma | 1/51 2% | 24/2550 1% |
| Neuroendocrine Tumour | 5/154 3% | 2/577 0% |
| Non-Small Cell Lung Carcinoma | 4/304 1% | 12/1390 1% |
| Esophageal Carcinoma | 0/23 0% | 7/769 1% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 7/810 1% |
| Small Cell Lung Carcinoma | 1/9 11% | 5/752 1% |
| Gastrointestinal Stromal Tumour | 0/0 0% | 1/133 1% |
| Hepatocellular Carcinoma | 0/46 0% | 17/2210 1% |
| Ovarian Carcinoma | 4/109 4% | 4/998 0% |
| Hodgkins Lymphoma | 1/16 6% | 0/122 0% |
| Head and Neck Carcinoma | 2/85 2% | 9/1574 1% |
| Non-Cancerous | 3/104 3% | 3/830 0% |
| Other Solid Cancers | 1/94 1% | 9/1515 1% |
| Plasma Cell Myeloma | 1/44 2% | 1/305 0% |
| Breast Carcinoma | 5/144 3% | 13/3264 0% |
| Pancreatic Carcinoma | 4/89 4% | 5/1611 0% |
Mutation Distribution
Where TBL3 is mutated · all tissues, split by cell line vs tissue
How many mutations in TBL3 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 393 mutations in TBL3
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|