Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 2,523 | 270 | 2,201 |
| Samples | 295 | 58 | 229 |
| Peptides | 223 | 44 | 185 |
Function
THRB · Thyroid hormone receptor beta
The protein encoded by this gene is a nuclear hormone receptor for triiodothyronine. It is one of the several receptors for thyroid hormone, and has been shown to mediate the biological activities of thyroid hormone. Knockout studies in mice suggest that the different receptors, while having certain extent of redundancy, may mediate different functions of thyroid hormone. Mutations in this gene are known to be a cause of generalized thyroid hormone resistance (GTHR), a syndrome characterized by goiter and high levels of circulating thyroid hormone (T3-T4), with normal or slightly elevated thyroid stimulating hormone (TSH). Several alternatively spliced transcript variants encoding the same protein have been observed for this gene. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
10 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000646209 | P10828 | 280 | 194 |
| ENST00000396671 | P10828 | 253 | 185 |
| ENST00000356447 | P10828 | 252 | 184 |
| ENST00000416420 | P10828 | 252 | 184 |
| ENST00000642307 | P10828 | 252 | 184 |
| ENST00000643772 | P10828 | 252 | 184 |
| ENST00000644321 | P10828 | 252 | 184 |
| ENST00000645139 | P10828 | 252 | 184 |
| ENST00000646432 | P10828 | 252 | 184 |
| ENST00000280696 | P10828-2 | 226 | 174 |
Gene Properties
Recurrent Mutations
All 194 amino-acid changes on canonical ENST00000646209 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in THRB · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in THRB – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| T-Lymphoblastic Leukemia | 7/40 18% | 0/0 0% |
| Oral Cavity Carcinoma | 2/54 4% | 0/0 0% |
| Melanoma | 10/210 5% | 57/1899 3% |
| Endometrial Carcinoma | 2/42 5% | 17/612 3% |
| Retinoblastoma | 1/27 4% | 0/30 0% |
| Colorectal Carcinoma | 8/143 6% | 47/3239 1% |
| Gastric Carcinoma | 2/74 3% | 20/1809 1% |
| Glioblastoma | 1/98 1% | 0/0 0% |
| Other Solid Cancers | 0/94 0% | 15/1515 1% |
| Plasma Cell Myeloma | 0/44 0% | 3/305 1% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 7/810 1% |
| Medulloblastoma | 0/0 0% | 3/450 1% |
| Small Cell Lung Carcinoma | 2/9 22% | 3/752 0% |
| Esophageal Squamous Cell Carcinoma | 4/51 8% | 12/2550 0% |
| Non-Cancerous | 1/104 1% | 4/830 0% |
| Germ Cell Tumour | 1/25 4% | 0/169 0% |
| Bladder Carcinoma | 0/58 0% | 5/956 1% |
| Rhabdomyosarcoma | 0/33 0% | 1/171 1% |
| Cervical Carcinoma | 1/35 3% | 1/422 0% |
| Burkitts Lymphoma | 1/32 3% | 0/196 0% |
| Neuroendocrine Tumour | 3/154 2% | 0/577 0% |
| Biliary Tract Carcinoma | 0/54 0% | 4/950 0% |
| Esophageal Carcinoma | 0/23 0% | 3/769 0% |
| Glioma | 0/52 0% | 7/2127 0% |
| Ewings Sarcoma | 1/63 2% | 0/262 0% |
| Hepatocellular Carcinoma | 0/46 0% | 7/2210 0% |
| Non-Small Cell Lung Carcinoma | 1/304 0% | 4/1390 0% |
| Pancreatic Carcinoma | 1/89 1% | 4/1611 0% |
| Head and Neck Carcinoma | 2/85 2% | 2/1574 0% |
| B-Lymphoblastic Leukemia | 4/55 7% | 0/2640 0% |
Mutation Distribution
Where THRB is mutated · all tissues, split by cell line vs tissue
How many mutations in THRB were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 2,523 mutations in THRB
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|