Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 828 | 144 | 674 |
| Samples | 102 | 30 | 71 |
| Peptides | 80 | 20 | 62 |
Function
TSPAN4 · Tetraspanin 4
The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein and is similar in sequence to its family member CD53 antigen. It is known to complex with integrins and other transmembrane 4 superfamily proteins. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008].
Isoforms & Proteins
10 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
| Transcript | UniProt | Mutations | Peptides |
|---|---|---|---|
| ENST00000397397 | O14817 | 102 | 67 |
| ENST00000397404 | O14817 | 86 | 61 |
| ENST00000397406 | O14817 | 86 | 61 |
| ENST00000397408 | O14817 | 86 | 61 |
| ENST00000397411 | O14817 | 86 | 61 |
| ENST00000409531 | J3KQ42* | 86 | 61 |
| ENST00000409543 | O14817 | 86 | 61 |
| ENST00000346501 | J3KNL1* | 74 | 53 |
| ENST00000397396 | A8MVV6* | 68 | 47 |
| ENST00000525201 | A8MVV6* | 68 | 47 |
Gene Properties
Recurrent Mutations
All 67 amino-acid changes on canonical ENST00000397397 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in TSPAN4 · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in TSPAN4 – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Chronic Myelogenous Leukemia | 3/25 12% | 0/0 0% |
| Hodgkins Lymphoma | 0/16 0% | 2/122 2% |
| Acute Myeloid Leukemia | 1/90 1% | 0/0 0% |
| Endometrial Carcinoma | 1/42 2% | 6/612 1% |
| Ovarian Carcinoma | 6/109 6% | 1/998 0% |
| Colorectal Carcinoma | 5/143 4% | 10/3239 0% |
| Cervical Carcinoma | 0/35 0% | 2/422 0% |
| Thyroid Gland Carcinoma | 0/45 0% | 7/1592 0% |
| Gastric Carcinoma | 0/74 0% | 8/1809 0% |
| Meningioma | 0/3 0% | 1/252 0% |
| Bladder Carcinoma | 1/58 2% | 2/956 0% |
| Plasma Cell Myeloma | 0/44 0% | 1/305 0% |
| Melanoma | 1/210 0% | 5/1899 0% |
| Prostate Carcinoma | 0/13 0% | 6/2105 0% |
| Neuroendocrine Tumour | 1/154 1% | 1/577 0% |
| Head and Neck Carcinoma | 0/85 0% | 4/1574 0% |
| Wilms Tumour | 0/5 0% | 1/474 0% |
| Non-Cancerous | 1/104 1% | 1/830 0% |
| Biliary Tract Carcinoma | 0/54 0% | 2/950 0% |
| Non-Small Cell Lung Carcinoma | 2/304 1% | 1/1390 0% |
| Breast Carcinoma | 3/144 2% | 2/3264 0% |
| Glioma | 0/52 0% | 3/2127 0% |
| Small Cell Lung Carcinoma | 0/9 0% | 1/752 0% |
| Other Sarcomas | 1/69 1% | 0/699 0% |
| Squamous Cell Lung Carcinoma | 0/57 0% | 1/810 0% |
| Other Solid Cancers | 1/94 1% | 1/1515 0% |
| Esophageal Squamous Cell Carcinoma | 2/51 4% | 0/2550 0% |
| Pancreatic Carcinoma | 0/89 0% | 1/1611 0% |
| Kidney Carcinoma | 1/85 1% | 0/1862 0% |
| B-Cell Non-Hodgkins Lymphoma | 0/88 0% | 1/2534 0% |
Mutation Distribution
Where TSPAN4 is mutated · all tissues, split by cell line vs tissue
How many mutations in TSPAN4 were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 828 mutations in TSPAN4
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|