Stats by Source
Total, split by cell line (COSMIC CL / DepMap / PubMed) vs tissue (COSMIC primary tissue)
Total = all mutations for this gene across every source.
Cell line = COSMIC Cell Lines Project + DepMap + PubMed.
Tissue = COSMIC primary-tissue (patient tumour) samples.
Total can exceed cell line + tissue: COSMIC tissue-derived models sit only in global, and a peptide can be shared across both.
| Total | Cell line | Tissue | |
|---|---|---|---|
| Mutations | 620 | 91 | 516 |
| Samples | 324 | 63 | 252 |
| Peptides | 246 | 39 | 207 |
Function
VIM · Vimentin
This gene encodes a type III intermediate filament protein. Intermediate filaments, along with microtubules and actin microfilaments, make up the cytoskeleton. The encoded protein is responsible for maintaining cell shape and integrity of the cytoplasm, and stabilizing cytoskeletal interactions. This protein is involved in neuritogenesis and cholesterol transport and functions as an organizer of a number of other critical proteins involved in cell attachment, migration, and signaling. Bacterial and viral pathogens have been shown to attach to this protein on the host cell surface. Mutations in this gene are associated with congenital cataracts in human patients. [provided by RefSeq, Aug 2017].
Isoforms & Proteins
2 transcripts · UniProt mapping is sequence-verified (AA-safe)
Each Ensembl transcript (ENST) this gene is mutated on, with its matched UniProt accession.
The mapping is sequence-verified: the UniProt sequence is identical to the transcript translation, so amino-acid positions line up exactly. A * marks an unreviewed (TrEMBL) entry.
Counts are mutations and unique mutant peptides on each transcript.
Gene Properties
Recurrent Mutations
All 246 amino-acid changes on canonical ENST00000544301 · needle height = samples · drag the mini-map to zoom
A lollipop / needle plot – the standard way to show recurrent mutations along a protein (as used by cBioPortal and MutationMapper).
X-axis = amino-acid position in the protein.
Needle height & head size = how often that exact amino-acid change was observed (its recurrence). Tall/large heads are mutational hotspots.
The most recurrent changes are labelled; hover any needle for the change, position and counts.
Mutation frequency across cancer types
% of samples with a missense/complex mutation in VIM · cell line vs tissue
For each cancer type, the fraction of samples that carry at least one missense/complex mutation anywhere in VIM – counted as distinct samples (a sample counts once no matter how many mutations it has).
Split into cell line and tissue; each cell shows mutated / total and the percentage. Cohorts with <20 samples are omitted. Ordered by combined frequency.
| Cancer type | Cell lines | Tissue samples |
|---|---|---|
| Endometrial Carcinoma | 3/42 7% | 12/612 2% |
| Melanoma | 9/210 4% | 33/1899 2% |
| Plasma Cell Myeloma | 1/44 2% | 5/305 2% |
| Gastric Carcinoma | 3/74 4% | 25/1809 1% |
| Rhabdomyosarcoma | 0/33 0% | 3/171 2% |
| Squamous Cell Lung Carcinoma | 1/57 2% | 11/810 1% |
| Burkitts Lymphoma | 0/32 0% | 3/196 2% |
| Non-Small Cell Lung Carcinoma | 13/304 4% | 9/1390 1% |
| Germ Cell Tumour | 1/25 4% | 1/169 1% |
| Glioblastoma | 1/98 1% | 0/0 0% |
| Hepatocellular Carcinoma | 1/46 2% | 21/2210 1% |
| Colorectal Carcinoma | 7/143 5% | 26/3239 1% |
| Other Solid Cancers | 1/94 1% | 14/1515 1% |
| Cervical Carcinoma | 2/35 6% | 2/422 0% |
| Adrenocortical Carcinoma | 0/3 0% | 1/112 1% |
| Neuroendocrine Tumour | 4/154 3% | 2/577 0% |
| Hodgkins Lymphoma | 1/16 6% | 0/122 0% |
| Bladder Carcinoma | 0/58 0% | 7/956 1% |
| Small Cell Lung Carcinoma | 0/9 0% | 5/752 1% |
| Ovarian Carcinoma | 2/109 2% | 5/998 0% |
| Head and Neck Carcinoma | 0/85 0% | 9/1574 1% |
| Other Sarcomas | 0/69 0% | 4/699 1% |
| Esophageal Carcinoma | 0/23 0% | 4/769 1% |
| Osteosarcoma | 0/45 0% | 1/166 1% |
| Mesothelioma | 1/62 2% | 0/165 0% |
| Prostate Carcinoma | 1/13 8% | 8/2105 0% |
| Esophageal Squamous Cell Carcinoma | 2/51 4% | 8/2550 0% |
| Breast Carcinoma | 0/144 0% | 12/3264 0% |
| Glioma | 0/52 0% | 7/2127 0% |
| B-Cell Non-Hodgkins Lymphoma | 5/88 6% | 3/2534 0% |
Mutation Distribution
Where VIM is mutated · all tissues, split by cell line vs tissue
How many mutations in VIM were found in each tissue, across the whole database.
Each bar is a tissue (cell-line and tissue names are merged to the standard tissue), split into cell line and tissue (patient tumour) contributions.
This shows the cancer-context where this gene is recurrently altered.
GTEx Expression
Median TPM across 54 healthy tissues
Median gene expression (TPM) in normal, non-cancer human tissues from the GTEx project.
Useful for judging tumour specificity – a strong neoantigen target ideally comes from a gene with low expression in healthy tissues.
Scroll or drag the mini-axis below the chart to browse all tissues.
Mutations
All 620 mutations in VIM
Every mutation record for this gene, across all samples and sources.
The Sample column links to the cell line (cell-line samples) or the tissue type (tissue samples).
Use the Type / Source filters, the search box, and column sorting to explore; each CAN-IMMUNE ID opens the full mutation & peptide view.
| ID | Sample | Transcript | AA Change | CDS | Type | Source | Mutant Peptide | Wild-type Peptide |
|---|